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Aliases for RNF138P1 Gene

Aliases for RNF138P1 Gene

  • Ring Finger Protein 138 Pseudogene 1 2 3 5
  • Ring Finger Protein 138, E3 Ubiquitin Protein Ligase Pseudogene 1 2

External Ids for RNF138P1 Gene

Previous GeneCards Identifiers for RNF138P1 Gene

  • GC05M054840
  • GC05M054860
  • GC05M054824

Summaries for RNF138P1 Gene

GeneCards Summary for RNF138P1 Gene

RNF138P1 (Ring Finger Protein 138 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF138P1 Gene

Genomics for RNF138P1 Gene

Regulatory Elements for RNF138P1 Gene

Enhancers for RNF138P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G056167 1.8 FANTOM5 Ensembl ENCODE dbSUPER 20.3 -634.9 -634853 3.7 PKNOX1 ZNF493 ZFP64 ZNF121 GATA2 KLF7 FOS ZNF202 SP3 REST DHX29 RPL26P19 ENSG00000271828 RNF138P1 SLC38A9 ENSG00000264281 LOC100419851 ENSG00000238326 RNU6-299P FLJ31104
GH05G055436 1.5 Ensembl ENCODE dbSUPER 19.9 +95.7 95652 4.0 ATF1 PKNOX1 SIN3A GATA2 FOS SP3 CREB3 ZNF610 SMARCA4 PBX2 RNF138P1 SKIV2L2 PLPP1 DHX29 CCNO GC05M055421 ENSG00000279883
GH05G055463 1 FANTOM5 26.3 +70.4 70439 0.3 ZNF493 ZFP64 ZNF155 ZNF121 ZNF23 ZNF138 ZNF354C KLF7 ZNF202 ZNF654 DHX29 RNF138P1 ENSG00000264281 LOC100419851 GPX8 SLC38A9 FLJ31104 ENSG00000279883 GC05M055421
GH05G055508 0.8 ENCODE dbSUPER 19.1 +24.6 24573 2.6 OSR2 CTCF SCRT1 HNF4A RAD21 PRDM1 NR2F2 RNF138P1 PLPP1 MIR5687
GH05G055494 0.7 ENCODE dbSUPER 19.6 +39.7 39684 0.9 CTCF HNF4A RAD21 RNF138P1 PLPP1 ENSG00000279883 MIR5687
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNF138P1 on UCSC Golden Path with GeneCards custom track

Promoters for RNF138P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000180761 242 2201 ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 GLIS2 KLF7 ZNF263 SP3

Genomic Location for RNF138P1 Gene

Chromosome:
5
Start:
55,528,842 bp from pter
End:
55,534,542 bp from pter
Size:
5,701 bases
Orientation:
Minus strand

Genomic View for RNF138P1 Gene

Genes around RNF138P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF138P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF138P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF138P1 Gene

Proteins for RNF138P1 Gene

Post-translational modifications for RNF138P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF138P1 Gene

Domains & Families for RNF138P1 Gene

Gene Families for RNF138P1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNF138P1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNF138P1 Gene

Function for RNF138P1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF138P1 Gene

Localization for RNF138P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNF138P1 Gene

Pathways & Interactions for RNF138P1 Gene

SuperPathways for RNF138P1 Gene

No Data Available

Interacting Proteins for RNF138P1 Gene

Gene Ontology (GO) - Biological Process for RNF138P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF138P1 Gene

Drugs & Compounds for RNF138P1 Gene

No Compound Related Data Available

Transcripts for RNF138P1 Gene

mRNA/cDNA for RNF138P1 Gene

(2) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RNF138P1 Gene

Ring finger protein 138, E3 ubiquitin protein ligase pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RNF138P1 Gene

No ASD Table

Relevant External Links for RNF138P1 Gene

GeneLoc Exon Structure for
RNF138P1
ECgene alternative splicing isoforms for
RNF138P1

Expression for RNF138P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNF138P1 Gene

mRNA differential expression in normal tissues according to GTEx for RNF138P1 Gene

This gene is overexpressed in Prostate (x6.8).

NURSA nuclear receptor signaling pathways regulating expression of RNF138P1 Gene:

RNF138P1

SOURCE GeneReport for Unigene cluster for RNF138P1 Gene:

Hs.745164
genes like me logo Genes that share expression patterns with RNF138P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNF138P1 Gene

Orthologs for RNF138P1 Gene

Evolution for RNF138P1 Gene

ENSEMBL:
Gene Tree for RNF138P1 (if available)
TreeFam:
Gene Tree for RNF138P1 (if available)

No data available for Orthologs for RNF138P1 Gene

Paralogs for RNF138P1 Gene

No data available for Paralogs for RNF138P1 Gene

Variants for RNF138P1 Gene

Sequence variations from dbSNP and Humsavar for RNF138P1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000153638 -- 55,534,329(+) AGAGG(C/G)GTGAA intron-variant, nc-transcript-variant
rs1000189854 -- 55,530,338(+) CACAG(C/G/T)AACTA intron-variant, nc-transcript-variant
rs1000364990 -- 55,536,402(+) AAAAC(A/G)AAATA upstream-variant-2KB
rs1000422296 -- 55,536,061(+) CTGAG(G/T)CCCTT upstream-variant-2KB
rs1000497943 -- 55,531,837(+) GGACA(A/G)TTGAT intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for RNF138P1 Gene

Variant ID Type Subtype PubMed ID
esv2675371 CNV deletion 23128226
nsv4834 CNV insertion 18451855
nsv830304 CNV gain+loss 17160897

Relevant External Links for RNF138P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF138P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF138P1 Gene

Disorders for RNF138P1 Gene

Relevant External Links for RNF138P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNF138P1

No disorders were found for RNF138P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF138P1 Gene

Publications for RNF138P1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for RNF138P1 Gene

Sources for RNF138P1 Gene

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