RNF138 Gene
protein-coding GIFtS: 54
GCID: GC18P029671
|
|
ring finger protein 138, E3 ubiquitin protein ligase(Previous name: ring finger protein 138 )
| |
Aliases
for RNF138 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Ring Finger Protein 138, E3 Ubiquitin Protein Ligase1 2 | | NLK-Associated RING Finger Protein2 3 | | NARF1 2 3 | | HSD-42 | | STRIN1 2 | | E3 Ubiquitin-Protein Ligase RNF1382 | | RING Finger Protein 1381 3 | | Nemo-Like Kinase Associated Ring Finger Protein2 | | HNARF1 | | EC 6.3.2.-3 | | Nemo-Like Kinase-Associated RING Finger Protein2 3 | | |
Export aliases for RNF138 gene to outside databasesPrevious GC identifers: GC18P029559 GC18P027924 GC18P027923 GC18P027925 GC18P026528 |
Summaries
for RNF138 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for RNF138:
The protein encoded by this gene contains a RING finger, a motif present in a variety of functionally distinct proteinsand known to be involved in protein-DNA and protein-protein interactions. Alternatively spliced transcript variantsencoding distinct isoforms have been observed. (provided by RefSeq, Jul 2008)
UniProtKB/Swiss-Prot: RN138_HUMAN, Q8WVD3Function: E3 ubiquitin-protein ligase. Together with NLK, involved in the ubiquitination and degradation of TCF/LEF.Also exhibits auto-ubiquitination activity in combination with UBE2K. May act as a negative regulator in theWnt/beta-catenin-mediated signaling pathway
|
Genomic Views
for RNF138 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000018.9 NC_018929.1 NT_010966.14
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the RNF138 gene promoter:
Max STAT5B HFH-1 CUTL1 c-Myc
Other transcription factors
Search SABiosciences Chromatin IP Primers for RNF138
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNF138 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 18q12.1 Ensembl cytogenetic band: 18q12.1 HGNC cytogenetic band: 18q12.1RNF138 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 18 GeneLoc Exon Structure GeneLoc location for GC18P029671: view genomic region
(about GC identifiers)
Start:
|
29,671,818 bp from pter |
End:
|
29,711,524 bp from pter |
Size:
|
39,707 bases |
Orientation:
|
plus strand |
|
Proteins
for RNF138 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: RN138_HUMAN, Q8WVD3 (See
protein sequence)Recommended Name: E3 ubiquitin-protein ligase RNF138 Size: 245 amino acids; 28193 Da
Subunit: Interacts with NLK
Secondary accessions: B2RE17 Q9H8K2 Q9UF87 Q9UKI6Alternative splicing: 2 isoforms: Q8WVD3-1 Q8WVD3-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for RNF138: NX_Q8WVD3
Post-translational modifications:
Auto-ubiquitinated1
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q8WVD3
RNF138 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (3 alternative transcripts):
NP_001178253.2 NP_057355.2 NP_937761.1
ENSEMBL proteins: ENSP00000261593 ENSP00000462165 ENSP00000462498 ENSP00000257190 ENSP00000463153 ENSP00000463659 Reactome Protein details: Q8WVD3
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005622 | intracellular |
IEA | -- |
RNF138 for ontologies About GeneDecksing
RNF138 Antibody Products:
Assay Products for RNF138: |
Protein
Domains /
Families
for RNF138 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
RNF138 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q8WVD3ProtoNet protein and cluster: Q8WVD3 1 Blocks protein family: IPB001841 Zn-finger
UniProtKB/Swiss-Prot: RN138_HUMAN, Q8WVD3Domain: The RING-type zinc finger domain mediates binding to an E2 ubiquitin-conjugating enzyme (By similarity)Similarity: Contains 1 RING-type zinc finger |
Function
for RNF138 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: RN138_HUMAN, Q8WVD3Function: E3 ubiquitin-protein ligase. Together with NLK, involved in the ubiquitination and degradation of TCF/LEF.Also exhibits auto-ubiquitination activity in combination with UBE2K. May act as a negative regulator in theWnt/beta-catenin-mediated signaling pathwayEnzyme Number (IUBMB): EC 6.3.2.-1
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RNF138 (see all 3)
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Synthesis Service for RNF138 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RNF138 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNF138 |
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view): About this table
RNF138 for ontologies About GeneDecksing
3 GenomeRNAi human phenotypes for RNF138:
|
Pathways & Interactions
for RNF138 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Antigen processing: Ubiquitination & Proteasome degradation | | | 2 | Immune System | |
Pathway sources
See GeneCards unified pathways
Show all pathways
5 
Reactome Pathways for RNF138
UniProtKB/Swiss-Prot: RN138_HUMAN, Q8WVD3Pathway: Protein modification; protein ubiquitination
RNF138 for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RNF138
STRING Interaction
Network Preview (showing 5 interactants - click image to see 13)
5/19 Interacting proteins for RNF138 (Q8WVD32, 3 ENSP000002615934) via UniProtKB, MINT, STRING, and/or I2D (see all 19)
About this table
Gene Ontology (GO): 2 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0016055 | Wnt receptor signaling pathway |
IEA | -- | | GO:0016567 | protein ubiquitination |
IEA | -- |
RNF138 for ontologies About GeneDecksing
|
Drugs & Compounds
for RNF138 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for RNF138
4 HMDB Compounds for RNF138 About this table
Search CenterWatch for drugs/clinical trials and news about RNF138 / RN138
|
Transcripts
for RNF138 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for RNF138 gene (3 alternative transcripts): NM_001191324.1 NM_016271.4 NM_198128.2 Unigene Cluster for RNF138: Ring finger protein 138, E3 ubiquitin protein ligase Hs.302408 [show with all ESTs]Unigene Representative Sequence: NM_0162719 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000261593(uc002kxg.3 uc021uip.1 uc002kxh.3) ENST00000585103
ENST00000578914 ENST00000580519 ENST00000578107 ENST00000583733 ENST00000257190
ENST00000580499 ENST00000577999
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RNF138 (see all 3)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
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Synthesis Service for RNF138 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RNF138 |
Additional cDNA sequence: AF162680.3 AK023579.1 AK315761.1 AL133557.1 BC018107.1 BT006878.1 CR457150.1 12 DOTS entries: DT.414102 DT.100786118 DT.100786121 DT.97795008 DT.92436213 DT.121090424 DT.121090429 DT.121090471 DT.40196238 DT.121090420 DT.121090418 DT.95145537 24/163 AceView cDNA sequences (see all 163): BX451775 NM_016271 AU253463 CR614694 BC018107 CR594800 BM727972 AA576876 N49156 BM973119 CB856619 AA768118 BU153978 CK904362 AA461508 BM463218 BE350955 BX106187 BM987886 NM_198128 AA446302 BE892495 BE887697 AA361819
GeneLoc Exon Structure
5/6 Alternative Splicing Database (ASD) splice patterns (SP) for RNF138 (see all 6) About this scheme
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2a | · | 2b | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | · | 5c | · | 5d | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 |
|---|
|
| SP1: | | | | | | | | | - | | | | - | | | | | | | | | | | | | | | | | | | | |
| SP2: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP3: | | | | | | | | | - | | | | - | | - | | | | | | | | | | | | | | | | | | |
| SP4: | | | | | | | | | - | | - | | - | | | | | | | | | | | | | | | | | | | | |
| SP5: | | | | | | | | | - | | | | | | | | | | | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for RNF138
|
Expression
for RNF138 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| RNF138 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GGCATTTGAT
About this image
See RNF138 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for RNF138
SOURCE GeneReport for Unigene cluster: Hs.302408
SABiosciences Expression via Pathway-Focused PCR Arrays including RNF138: | Toll-Like Receptor Signaling Pathway in human mouse rat | | Ubiquitin Ligases in human mouse rat |
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RNF138
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Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNF138 |
Orthologs
for RNF138 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for RNF138 gene from 3/12 species (see all 12) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
chicken
(Gallus gallus) |
Aves |
RNF1381 |
ring finger protein 138 |
77.46(n)
72.2(a) |
|
421096 XM_419180.3 XP_419180.3 |
lizard
(Anolis carolinensis) |
Reptilia |
RNF1386 |
-- |
66(a) |
1 ↔ 1 |
GL343207.1(3423280-3431887) |
tropical clawed frog
(Xenopus tropicalis) |
Amphibia |
BG512761.12 |
-- |
70.32(n) |
|
BG512761.1 |
ENSEMBL Gene Tree for RNF138 (if available)
TreeFam Gene Tree for RNF138 (if available) |
Paralogs
for RNF138 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for RNF138 gene
- RNF1252 RNF1662 RNF1142
7 SIMAP similar genes for RNF138 using alignment to 5 protein entries: RN138_HUMAN (see all proteins):RNF151 BRCA1 PCGF3 SH3RF1 TRIM60 TRIM5
TRIM59
RNF138 for paralogs About GeneDecksing
2 Pseudogenes.org Pseudogenes for RNF138
PGOHUM00000235223 PGOHUM00000263179
|
Genomic Variants
for RNF138 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 18 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for RNF138 (29671818 - 29711524 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for RNF138
1 CNV: 3163 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RNF138 |
|
Disorders
/ Diseases
for RNF138 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
RNF138 for disorders About GeneDecksing
2  diseases for RNF138: About MalaCardscrohn's disease ataxia
Human Genome Epidemiology (HuGE) Navigator: RNF138 (1 document)
Export disorders for RNF138 gene to outside databases
|
Publications
for RNF138 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for RNF138 gene, integrated from 9 sources (see all 19):
(articles sorted by number of sources associating them with RNF138) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- NARF, an nemo-like kinase (NLK)-associated ring finger protein regulates the ubiquitylation and degradation of T cell factor/lymphoid enhancer factor (TCF/LEF). (PubMed id 16714285)1, 2, 3 Yamada M.... Shibuya H. (2006)
- A novel gene RNF138 expressed in human gliomas and its function in the glioma cell line U251. (PubMed id 22155992)1, 3 Zhou Y.X....Du Z.W. (2012)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- Systematic analysis of dimeric E3-RING interactions re veals increased combinatorial complexity in human ubiquitination networks. (PubMed id 22493164)1 Woodsmith J....Sanderson C.M. (2012)
- Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
- Dynamics of cullin-RING ubiquitin ligase network revea led by systematic quantitative proteomics. (PubMed id 21145461)1 Bennett E.J....Harper J.W. (2010)
- Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network. (PubMed id 19549727)1 Markson G....Sanderson C.M. (2009)
- Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (2009)
|
External Searches for RNF138 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing RNF138 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing RNF138 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing RNF138 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for RNF138 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for RNF138 gene:
Search GeneIP for patents involving RNF138
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for RNF138 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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| |
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| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNF138 |
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| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RNF138 |
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