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Aliases for RNF130 Gene

Aliases for RNF130 Gene

  • Ring Finger Protein 130 2 3
  • Goliath Homolog 3 4
  • G1-Related Zinc Finger Protein 3
  • RING Finger Protein 130 4
  • EC 6.3.2.- 4
  • H-Goliath 4
  • EC 2.1.1 63
  • EC 6.3.2 63
  • GOLIATH 3
  • G1RZFP 3
  • GP 3

External Ids for RNF130 Gene

Previous GeneCards Identifiers for RNF130 Gene

  • GC05M179446
  • GC05M179492
  • GC05M179315
  • GC05M179382
  • GC05M174107
  • GC05M179345

Summaries for RNF130 Gene

Entrez Gene Summary for RNF130 Gene

  • The protein encoded by this gene contains a RING finger motif and is similar to g1, a Drosophila zinc-finger protein that is expressed in mesoderm and involved in embryonic development. The expression of the mouse counterpart was found to be upregulated in myeloblastic cells following IL3 deprivation, suggesting that this gene may regulate growth factor withdrawal-induced apoptosis of myeloid precursor cells. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]

GeneCards Summary for RNF130 Gene

RNF130 (Ring Finger Protein 130) is a Protein Coding gene. GO annotations related to this gene include ligase activity and ubiquitin-protein transferase activity. An important paralog of this gene is RNF167.

UniProtKB/Swiss-Prot for RNF130 Gene

  • May have a role during the programmed cell death of hematopoietic cells (By similarity). Acts as an E3 ubiquitin-protein ligase.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF130 Gene

Genomics for RNF130 Gene

Regulatory Elements for RNF130 Gene

Genomic Location for RNF130 Gene

Chromosome:
5
Start:
179,911,651 bp from pter
End:
180,072,130 bp from pter
Size:
160,480 bases
Orientation:
Minus strand

Genomic View for RNF130 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNF130 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF130 Gene

Proteins for RNF130 Gene

  • Protein details for RNF130 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86XS8-GOLI_HUMAN
    Recommended name:
    E3 ubiquitin-protein ligase RNF130
    Protein Accession:
    Q86XS8
    Secondary Accessions:
    • J3KN31
    • Q32P32
    • Q59EL1
    • Q641P9
    • Q6P177
    • Q7L2U2
    • Q9P0J9

    Protein attributes for RNF130 Gene

    Size:
    419 amino acids
    Molecular mass:
    46405 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAF67007.1; Type=Frameshift; Positions=110, 116; Evidence={ECO:0000305}; Sequence=BAD93037.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for RNF130 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RNF130 Gene

Proteomics data for RNF130 Gene at MOPED

Selected DME Specific Peptides for RNF130 Gene

Post-translational modifications for RNF130 Gene

  • In vivo measurements suggest this protein is glycosylated (PubMed:19159218). In contrast, in vitro experiments failed to detect glycosylation (PubMed:16549277).
  • Ubiquitination at Lys 310
  • Glycosylation at Asn 29, Asn 40, Asn 112, Asn 135, Asn 172, and Asn 189
  • Modification sites at PhosphoSitePlus

Other Protein References for RNF130 Gene

Domains & Families for RNF130 Gene

Gene Families for RNF130 Gene

Protein Domains for RNF130 Gene

Suggested Antigen Peptide Sequences for RNF130 Gene

Graphical View of Domain Structure for InterPro Entry

Q86XS8

UniProtKB/Swiss-Prot:

GOLI_HUMAN :
  • Contains 1 PA (protease associated) domain.
  • Contains 1 RING-type zinc finger.
Domain:
  • Contains 1 PA (protease associated) domain.
Similarity:
  • Contains 1 RING-type zinc finger.
genes like me logo Genes that share domains with RNF130: view

Function for RNF130 Gene

Molecular function for RNF130 Gene

UniProtKB/Swiss-Prot Function:
May have a role during the programmed cell death of hematopoietic cells (By similarity). Acts as an E3 ubiquitin-protein ligase.

Enzyme Numbers (IUBMB) for RNF130 Gene

Gene Ontology (GO) - Molecular Function for RNF130 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004842 ubiquitin-protein transferase activity IDA 16549277
GO:0005515 protein binding --
GO:0008270 zinc ion binding IEA --
GO:0016874 ligase activity IEA --
genes like me logo Genes that share ontologies with RNF130: view
genes like me logo Genes that share phenotypes with RNF130: view

Animal Model Products

miRNA for RNF130 Gene

miRTarBase miRNAs that target RNF130

No data available for Animal Models , Transcription Factor Targets and HOMER Transcription for RNF130 Gene

Localization for RNF130 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RNF130 Gene

Membrane; Single-pass type I membrane protein. Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RNF130 Gene COMPARTMENTS Subcellular localization image for RNF130 gene
Compartment Confidence
nucleus 4
cytosol 2

Gene Ontology (GO) - Cellular Components for RNF130 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IDA 16549277
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with RNF130: view

Pathways & Interactions for RNF130 Gene

SuperPathways for RNF130 Gene

No Data Available

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

UniProtKB/Swiss-Prot Q86XS8-GOLI_HUMAN

  • Pathway: Protein modification; protein ubiquitination.

Gene Ontology (GO) - Biological Process for RNF130 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006915 apoptotic process IEA --
GO:0012501 programmed cell death ISS 13679316
GO:0016567 protein ubiquitination IEA --
genes like me logo Genes that share ontologies with RNF130: view

No data available for Pathways by source and SIGNOR curated interactions for RNF130 Gene

Drugs & Compounds for RNF130 Gene

No Compound Related Data Available

Transcripts for RNF130 Gene

Unigene Clusters for RNF130 Gene

Ring finger protein 130:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RNF130

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNF130 Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10
SP1: - -
SP2: - - - -
SP3: - - -
SP4:
SP5:

Relevant External Links for RNF130 Gene

GeneLoc Exon Structure for
RNF130
ECgene alternative splicing isoforms for
RNF130

Expression for RNF130 Gene

mRNA expression in normal human tissues for RNF130 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RNF130 Gene

This gene is overexpressed in Whole Blood (x5.4).

Protein differential expression in normal tissues from HIPED for RNF130 Gene

This gene is overexpressed in Adipocyte (64.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for RNF130 Gene



SOURCE GeneReport for Unigene cluster for RNF130 Gene Hs.484363

mRNA Expression by UniProt/SwissProt for RNF130 Gene

Q86XS8-GOLI_HUMAN
Tissue specificity: Ubiquitously expressed. Highly expressed in leukocytes. Not expressed in erythroblasts.
genes like me logo Genes that share expression patterns with RNF130: view

Protein tissue co-expression partners for RNF130 Gene

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

Orthologs for RNF130 Gene

This gene was present in the common ancestor of animals.

Orthologs for RNF130 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia RNF130 35
  • 94.59 (n)
  • 98.57 (a)
RNF130 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RNF130 35
  • 94.86 (n)
  • 99.11 (a)
RNF130 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rnf130 35
  • 93.16 (n)
  • 98.09 (a)
Rnf130 16
Rnf130 36
  • 98 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia RNF130 35
  • 99.6 (n)
  • 100 (a)
RNF130 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC652955 35
  • 93.32 (n)
  • 98.09 (a)
oppossum
(Monodelphis domestica)
Mammalia RNF130 36
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RNF130 36
  • 93 (a)
OneToOne
chicken
(Gallus gallus)
Aves RNF130 35
  • 80.5 (n)
  • 83.75 (a)
RNF130 36
  • 80 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RNF130 36
  • 81 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rnf130 35
  • 71.61 (n)
  • 77.64 (a)
Str.15810 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.33763 35
zebrafish
(Danio rerio)
Actinopterygii wufc14g02 35
zgc:113271 35
  • 66.2 (n)
  • 66.57 (a)
RNF130 (1 of 2) 36
  • 65 (a)
OneToMany
RNF130 (2 of 2) 36
  • 41 (a)
OneToMany
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.8367 35
worm
(Caenorhabditis elegans)
Secernentea H10E21.5 36
  • 22 (a)
OneToMany
Species with no ortholog for RNF130:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RNF130 Gene

ENSEMBL:
Gene Tree for RNF130 (if available)
TreeFam:
Gene Tree for RNF130 (if available)

Paralogs for RNF130 Gene

(7) SIMAP similar genes for RNF130 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with RNF130: view

Variants for RNF130 Gene

Structural Variations from Database of Genomic Variants (DGV) for RNF130 Gene

Variant ID Type Subtype PubMed ID
nsv830561 CNV Loss 17160897
esv2674593 CNV Deletion 23128226
esv2731313 CNV Deletion 23290073
esv2731314 CNV Deletion 23290073
esv2731315 CNV Deletion 23290073

Variation tolerance for RNF130 Gene

Residual Variation Intolerance Score: 37.36% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.40; 27.47% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RNF130 Gene

HapMap Linkage Disequilibrium report
RNF130

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for RNF130 Gene

Disorders for RNF130 Gene

Relevant External Links for RNF130

Genetic Association Database (GAD)
RNF130
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNF130
genes like me logo Genes that share disorders with RNF130: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF130 Gene

Publications for RNF130 Gene

  1. Cloning of murine G1RP, a novel gene related to Drosophila melanogaster g1. (PMID: 10806348) Baker S.J. … Reddy E.P. (Gene 2000) 2 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 67
  3. Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project. (PMID: 21347282) Lettre G. … Boerwinkle E. (PLoS Genet. 2011) 67
  4. Proteomic profiling of Myc-associated proteins. (PMID: 21150319) Agrawal P. … Sedivy J.M. (Cell Cycle 2010) 67
  5. Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PMID: 19690332) Mayya V. … Han D.K. (Sci. Signal. 2009) 67

Products for RNF130 Gene

Sources for RNF130 Gene

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