Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNF126P1 Gene

Aliases for RNF126P1 Gene

  • Ring Finger Protein 126 Pseudogene 1 2 3 5

External Ids for RNF126P1 Gene

Previous GeneCards Identifiers for RNF126P1 Gene

  • GC17P055595
  • GC17P052473
  • GC17P055122
  • GC17P050483

Summaries for RNF126P1 Gene

GeneCards Summary for RNF126P1 Gene

RNF126P1 (Ring Finger Protein 126 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF126P1 Gene

Genomics for RNF126P1 Gene

Regulatory Elements for RNF126P1 Gene

Enhancers for RNF126P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F057053 1.1 Ensembl ENCODE 10.4 +9.0 8997 1.2 PKNOX1 RAD21 ZNF263 NCOA1 CEBPB ZEB2 ZNF585B SMARCA4 IKZF1 CEBPA AKAP1 DGKE SRSF1 RNF126P1 GC17P057054 ENSG00000263004
GH17F057045 0.5 ENCODE 19.6 +0.8 758 1.5 POLR2A SCRT2 RELA RNF126P1 AKAP1 SCPEP1 GC17P057053 GC17P057054 PIR52728
GH17F057544 1.7 FANTOM5 Ensembl ENCODE 5.2 +506.4 506389 13.9 HDGF PKNOX1 CREB3L1 ARID4B FEZF1 ZNF2 YY1 ZNF143 FOS SP5 RNF126P1 DYNLL2 MSI2 ENSG00000280028 LOC101927539
GH17F057051 0.6 ENCODE 11.8 +6.5 6503 1.3 ZNF362 L3MBTL2 ZNF366 ZNF384 ZNF600 RNF126P1 AKAP1 GC17P057054 ENSG00000263004
GH17F056754 0.9 Ensembl ENCODE 5.8 -289.8 -289764 3.2 BCOR HDAC1 BHLHE40 ZMYM3 ZNF623 JUND PBX2 KDM1A FOXP2 FOS NOG RNF126P1 GC17M056765 GC17M056726
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNF126P1 on UCSC Golden Path with GeneCards custom track

Promoters for RNF126P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001349568 822 1401 POLR2A SCRT2 RELA

Genomic Location for RNF126P1 Gene

Chromosome:
17
Start:
57,045,478 bp from pter
End:
57,046,797 bp from pter
Size:
1,320 bases
Orientation:
Plus strand

Genomic View for RNF126P1 Gene

Genes around RNF126P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF126P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF126P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF126P1 Gene

Proteins for RNF126P1 Gene

Post-translational modifications for RNF126P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF126P1 Gene

Domains & Families for RNF126P1 Gene

Gene Families for RNF126P1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNF126P1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNF126P1 Gene

Function for RNF126P1 Gene

Phenotypes for RNF126P1 Gene

genes like me logo Genes that share phenotypes with RNF126P1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF126P1 Gene

Localization for RNF126P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNF126P1 Gene

Pathways & Interactions for RNF126P1 Gene

SuperPathways for RNF126P1 Gene

No Data Available

Interacting Proteins for RNF126P1 Gene

Gene Ontology (GO) - Biological Process for RNF126P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF126P1 Gene

Transcripts for RNF126P1 Gene

mRNA/cDNA for RNF126P1 Gene

(2) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RNF126P1 Gene

Ring finger protein 126 pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RNF126P1 Gene

No ASD Table

Relevant External Links for RNF126P1 Gene

GeneLoc Exon Structure for
RNF126P1
ECgene alternative splicing isoforms for
RNF126P1

Expression for RNF126P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNF126P1 Gene

mRNA differential expression in normal tissues according to GTEx for RNF126P1 Gene

This gene is overexpressed in Testis (x34.6).

NURSA nuclear receptor signaling pathways regulating expression of RNF126P1 Gene:

RNF126P1

SOURCE GeneReport for Unigene cluster for RNF126P1 Gene:

Hs.132299
genes like me logo Genes that share expression patterns with RNF126P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNF126P1 Gene

Orthologs for RNF126P1 Gene

Evolution for RNF126P1 Gene

ENSEMBL:
Gene Tree for RNF126P1 (if available)
TreeFam:
Gene Tree for RNF126P1 (if available)

No data available for Orthologs for RNF126P1 Gene

Paralogs for RNF126P1 Gene

No data available for Paralogs for RNF126P1 Gene

Variants for RNF126P1 Gene

Sequence variations from dbSNP and Humsavar for RNF126P1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs10678494 -- 57,044,323(+) CTCCA(-/AA)AAAAA upstream-variant-2KB
rs111409209 -- 57,043,576(+) CCGAA(C/T)TCCAG upstream-variant-2KB
rs112117539 -- 57,046,986(+) CTTTT(G/T)TTTTT downstream-variant-500B
rs112355993 -- 57,044,527(+) CTGTC(A/C/G)TCCCA upstream-variant-2KB
rs112903787 -- 57,044,310(+) TCTCC(-/AAAAAAAAAAAAAAAGA)AAAAG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RNF126P1 Gene

Variant ID Type Subtype PubMed ID
esv33941 CNV loss 17666407
nsv2105 CNV deletion 18451855

Relevant External Links for RNF126P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF126P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF126P1 Gene

Disorders for RNF126P1 Gene

Relevant External Links for RNF126P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNF126P1

No disorders were found for RNF126P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF126P1 Gene

Publications for RNF126P1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64

Products for RNF126P1 Gene

Sources for RNF126P1 Gene

Content
Loading form....