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Aliases for RNF125 Gene

Aliases for RNF125 Gene

  • Ring Finger Protein 125, E3 Ubiquitin Protein Ligase 2 3
  • T-Cell RING Activation Protein 1 3 4
  • TRAC-1 3 4
  • TRAC1 3 6
  • T-Cell Ring Protein Identified In Activation Screen 3
  • E3 Ubiquitin-Protein Ligase RNF125 3
  • Ring Finger Protein 125 2
  • RING Finger Protein 125 4
  • EC 6.3.2.- 4
  • TNORS 3

External Ids for RNF125 Gene

Summaries for RNF125 Gene

Entrez Gene Summary for RNF125 Gene

  • This gene encodes a novel E3 ubiquitin ligase that contains a RING finger domain in the N-terminus and three zinc-binding and one ubiquitin-interacting motif in the C-terminus. As a result of myristoylation, this protein associates with membranes and is primarily localized to intracellular membrane systems. The encoded protein may function as a positive regulator in the T-cell receptor signaling pathway. [provided by RefSeq, Mar 2012]

GeneCards Summary for RNF125 Gene

RNF125 (Ring Finger Protein 125, E3 Ubiquitin Protein Ligase) is a Protein Coding gene. Among its related pathways are RIG-I/MDA5 mediated induction of IFN-alpha/beta pathways and RIG-I/MDA5 mediated induction of IFN-alpha/beta pathways. GO annotations related to this gene include ubiquitin-protein transferase activity. An important paralog of this gene is RNF166.

UniProtKB/Swiss-Prot for RNF125 Gene

  • E3 ubiquitin-protein ligase that acts as a positive regulator of T-cell activation. E3 ligase proteins mediate ubiquitination and subsequent proteasomal degradation of target proteins.

Gene Wiki entry for RNF125 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF125 Gene

Genomics for RNF125 Gene

Genomic Location for RNF125 Gene

Start:
32,018,372 bp from pter
End:
32,073,213 bp from pter
Size:
54,842 bases
Orientation:
Plus strand

Genomic View for RNF125 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNF125 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF125 Gene

Regulatory Elements for RNF125 Gene

Proteins for RNF125 Gene

  • Protein details for RNF125 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96EQ8-RN125_HUMAN
    Recommended name:
    E3 ubiquitin-protein ligase RNF125
    Protein Accession:
    Q96EQ8
    Secondary Accessions:
    • Q9NX39

    Protein attributes for RNF125 Gene

    Size:
    232 amino acids
    Molecular mass:
    26454 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RNF125 Gene

Proteomics data for RNF125 Gene at MOPED

Post-translational modifications for RNF125 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys69 and Lys91

Other Protein References for RNF125 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for RNF125 Gene

Domains for RNF125 Gene

Gene Families for RNF125 Gene

HGNC:
  • RNF :RING-type (C3HC4) zinc fingers

Protein Domains for RNF125 Gene

UniProtKB/Swiss-Prot:

RN125_HUMAN
Similarity:
  • Contains 1 RING-type zinc finger.:
    • Q96EQ8
genes like me logo Genes that share domains with RNF125: view

Function for RNF125 Gene

Molecular function for RNF125 Gene

UniProtKB/Swiss-Prot Function: E3 ubiquitin-protein ligase that acts as a positive regulator of T-cell activation. E3 ligase proteins mediate ubiquitination and subsequent proteasomal degradation of target proteins.

Enzyme Numbers (IUBMB) for RNF125 Gene

Gene Ontology (GO) - Molecular Function for RNF125 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004842 ubiquitin-protein transferase activity IEA --
GO:0005515 protein binding --
GO:0008270 zinc ion binding IEA --
GO:0016874 ligase activity IEA --
GO:0046872 metal ion binding --
genes like me logo Genes that share ontologies with RNF125: view

miRNA for RNF125 Gene

miRTarBase miRNAs that target RNF125

No data available for Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for RNF125 Gene

Localization for RNF125 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RNF125 Gene COMPARTMENTS Subcellular localization image for RNF125 gene
Compartment Confidence
nucleus 3
cytosol 1
golgi apparatus 1

No data available for Gene Ontology (GO) - Cellular Components for RNF125 Gene

Pathways for RNF125 Gene

genes like me logo Genes that share pathways with RNF125: view

Pathways by source for RNF125 Gene

UniProtKB/Swiss-Prot Q96EQ8-RN125_HUMAN

  • Pathway: Protein modification; protein ubiquitination

Gene Ontology (GO) - Biological Process for RNF125 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016567 protein ubiquitination IEA --
GO:0032480 negative regulation of type I interferon production TAS --
GO:0045087 innate immune response TAS --
genes like me logo Genes that share ontologies with RNF125: view

Transcripts for RNF125 Gene

mRNA/cDNA for RNF125 Gene

Unigene Clusters for RNF125 Gene

Ring finger protein 125, E3 ubiquitin protein ligase:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RNF125 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6a · 6b
SP1: - -
SP2: - -
SP3: - -
SP4: - -

Relevant External Links for RNF125 Gene

GeneLoc Exon Structure for
RNF125
ECgene alternative splicing isoforms for
RNF125

Expression for RNF125 Gene

mRNA expression in normal human tissues for RNF125 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for RNF125 Gene

SOURCE GeneReport for Unigene cluster for RNF125 Gene Hs.633703

mRNA Expression by UniProt/SwissProt for RNF125 Gene

Q96EQ8-RN125_HUMAN
Tissue specificity: Predominantly expressed in lymphoid tissues, including bone marrow, spleen and thymus. Also weakly expressed in other tissues. Predominant in the CD4+ and CD8+ T-cells, suggesting that it is preferentially confined to T-cells.
genes like me logo Genes that share expressions with RNF125: view

Orthologs for RNF125 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNF125 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RNF125 36
  • 99.71 (n)
  • 99.57 (a)
RNF125 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RNF125 36
  • 88.02 (n)
  • 90.04 (a)
RNF125 37
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RNF125 36
  • 89.66 (n)
  • 90.95 (a)
RNF125 37
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rnf125 16
Rnf125 37
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RNF125 37
  • 77 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rnf125 36
  • 83.91 (n)
  • 85.78 (a)
lizard
(Anolis carolinensis)
Reptilia RNF125 37
  • 63 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rnf125 36
  • 60.03 (n)
  • 54.3 (a)
zebrafish
(Danio rerio)
Actinopterygii RNF125 37
  • 14 (a)
OneToOne
Species with no ortholog for RNF125:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNF125 Gene

ENSEMBL:
Gene Tree for RNF125 (if available)
TreeFam:
Gene Tree for RNF125 (if available)

Paralogs for RNF125 Gene

Paralogs for RNF125 Gene

Selected SIMAP similar genes for RNF125 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with RNF125: view

Variants for RNF125 Gene

Sequence variations from dbSNP and Humsavar for RNF125 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type MAF
rs168058 -- 32,041,975(-) GAAGA(C/T)CCAAC intron-variant
rs170861 -- 32,057,237(-) ATTCA(A/G)TTATC intron-variant
rs189209 -- 32,056,703(-) TTTTT(C/T)TTGAG intron-variant
rs336272 -- 32,056,349(-) CAGTC(A/G)GGAGC intron-variant
rs336273 -- 32,056,105(-) TATGA(C/T)GTTAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RNF125 Gene

Variant ID Type Subtype PubMed ID
nsv524199 CNV Loss 19592680
dgv1021e1 CNV Complex 17122850
nsv909520 CNV Gain 21882294
dgv3404n71 CNV Gain 21882294

Relevant External Links for RNF125 Gene

HapMap Linkage Disequilibrium report
RNF125
Human Gene Mutation Database (HGMD)
RNF125

Disorders for RNF125 Gene

Relevant External Links for RNF125

Genetic Association Database (GAD)
RNF125
genes like me logo Genes that share disorders with RNF125: view

No data available for UniProtKB/Swiss-Prot for RNF125 Gene

Publications for RNF125 Gene

  1. Systematic identification of regulatory proteins critical for T-cell activation. (PMID: 12974981) Chu P. … Liao X.C. (J. Biol. 2003) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. A novel E3 ubiquitin ligase TRAC-1 positively regulates T cell activation. (PMID: 15843525) Zhao H. … Masuda E.S. (J. Immunol. 2005) 3 4
  5. T-cell regulator RNF125/TRAC-1 belongs to a novel family of ubiquitin ligases with zinc fingers and a ubiquitin-binding domain. (PMID: 17990982) Giannini A.L. … Bijlmakers M.J. (Biochem. J. 2008) 3 23

Products for RNF125 Gene

Sources for RNF125 Gene

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