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Aliases for RNF121 Gene

Aliases for RNF121 Gene

  • Ring Finger Protein 121 2 3

External Ids for RNF121 Gene

Summaries for RNF121 Gene

Entrez Gene Summary for RNF121 Gene

  • The protein encoded by this gene contains a RING finger, a motif present in a variety of functionally distinct proteins and known to be involved in protein-protein and protein-DNA interactions. Several alternatively spliced transcript variants have been noted for this gene, however, not all are likely to encode viable protein products. [provided by RefSeq, Sep 2008]

GeneCards Summary for RNF121 Gene

RNF121 (Ring Finger Protein 121) is a Protein Coding gene. An important paralog of this gene is RNF175.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF121 Gene

Genomics for RNF121 Gene

Genomic Location for RNF121 Gene

Start:
71,928,701 bp from pter
End:
71,997,597 bp from pter
Size:
68,897 bases
Orientation:
Plus strand

Genomic View for RNF121 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNF121 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF121 Gene

Regulatory Elements for RNF121 Gene

Proteins for RNF121 Gene

  • Protein details for RNF121 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H920-RN121_HUMAN
    Recommended name:
    RING finger protein 121
    Protein Accession:
    Q9H920
    Secondary Accessions:
    • B3KSW8
    • Q6IA57
    • Q6P449
    • Q96DB4

    Protein attributes for RNF121 Gene

    Size:
    327 amino acids
    Molecular mass:
    37882 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH09672.2; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAH63680.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for RNF121 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RNF121 Gene

Proteomics data for RNF121 Gene at MOPED

Post-translational modifications for RNF121 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for RNF121 Gene

Domains for RNF121 Gene

Gene Families for RNF121 Gene

HGNC:
  • RNF :RING-type (C3HC4) zinc fingers

Protein Domains for RNF121 Gene

InterPro:
Blocks:
ProtoNet:

UniProtKB/Swiss-Prot:

RN121_HUMAN
Family:
  • Belongs to the RNF121 family.:
    • Q9H920
Similarity:
  • Contains 1 RING-type zinc finger.:
    • Q9H920
genes like me logo Genes that share domains with RNF121: view

Function for RNF121 Gene

Gene Ontology (GO) - Molecular Function for RNF121 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
GO:0008270 zinc ion binding IEA --
GO:0061630 ubiquitin protein ligase activity IBA --
genes like me logo Genes that share ontologies with RNF121: view

miRNA for RNF121 Gene

miRTarBase miRNAs that target RNF121

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for RNF121 Gene

Localization for RNF121 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RNF121 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RNF121 Gene COMPARTMENTS Subcellular localization image for RNF121 gene
Compartment Confidence
plasma membrane 3
peroxisome 2
golgi apparatus 1
nucleus 1

Gene Ontology (GO) - Cellular Components for RNF121 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane IBA --
GO:0005789 endoplasmic reticulum membrane IBA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with RNF121: view

Pathways for RNF121 Gene

SuperPathways for RNF121 Gene

No Data Available

Interacting Proteins for RNF121 Gene

Gene Ontology (GO) - Biological Process for RNF121 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016567 protein ubiquitination IBA --
GO:0030433 ER-associated ubiquitin-dependent protein catabolic process IBA --
GO:0030968 endoplasmic reticulum unfolded protein response IBA --
genes like me logo Genes that share ontologies with RNF121: view

No data available for Pathways by source for RNF121 Gene

Transcripts for RNF121 Gene

Unigene Clusters for RNF121 Gene

Ring finger protein 121:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RNF121 Gene

No ASD Table

Relevant External Links for RNF121 Gene

GeneLoc Exon Structure for
RNF121
ECgene alternative splicing isoforms for
RNF121

Expression for RNF121 Gene

mRNA expression in normal human tissues for RNF121 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RNF121 Gene

SOURCE GeneReport for Unigene cluster for RNF121 Gene Hs.368554

genes like me logo Genes that share expressions with RNF121: view

Orthologs for RNF121 Gene

This gene was present in the common ancestor of animals.

Orthologs for RNF121 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RNF121 36
  • 99.59 (n)
  • 100 (a)
RNF121 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RNF121 36
  • 94.33 (n)
  • 98.98 (a)
RNF121 37
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RNF121 36
  • 94.09 (n)
  • 99.39 (a)
RNF121 37
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rnf121 36
  • 91.54 (n)
  • 98.17 (a)
Rnf121 16
Rnf121 37
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RNF121 37
  • 93 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rnf121 36
  • 91.85 (n)
  • 97.86 (a)
chicken
(Gallus gallus)
Aves RNF121 36
  • 84.51 (n)
  • 94.46 (a)
RNF121 37
  • 91 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RNF121 37
  • 83 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia MGC69129 36
tropical clawed frog
(Silurana tropicalis)
Amphibia MGC75651 36
rnf121 36
  • 80.94 (n)
  • 90.83 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10586 36
zebrafish
(Danio rerio)
Actinopterygii rnf121 36
  • 73.6 (n)
  • 80.12 (a)
rnf121 37
  • 77 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP008041 36
  • 62.05 (n)
  • 61.72 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG15814 36
  • 64.7 (n)
  • 60 (a)
CG15814 37
  • 57 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea rnf-121 36
  • 57.11 (n)
  • 54.33 (a)
rnf-121 37
  • 39 (a)
OneToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.8704 36
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 64 (a)
OneToMany
Species with no ortholog for RNF121:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RNF121 Gene

ENSEMBL:
Gene Tree for RNF121 (if available)
TreeFam:
Gene Tree for RNF121 (if available)

Paralogs for RNF121 Gene

Paralogs for RNF121 Gene

genes like me logo Genes that share paralogs with RNF121: view

Variants for RNF121 Gene

Sequence variations from dbSNP and Humsavar for RNF121 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs947932 -- 71,945,659(-) TCTTC(C/T)TTGTA intron-variant
rs1055452 -- 71,996,419(+) AGGGG(C/T)GCTTG utr-variant-3-prime, nc-transcript-variant
rs1892920 -- 71,991,385(-) tggca(C/T)atagc intron-variant
rs1892921 -- 71,991,092(-) tcaac(C/T)gttgt intron-variant
rs1939241 -- 71,994,083(-) gaggg(C/T)ggatc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RNF121 Gene

Variant ID Type Subtype PubMed ID
dgv396e1 CNV Complex 17122850
nsv428262 CNV Gain+Loss 18775914
nsv509428 CNV Insertion 20534489
esv32752 CNV Loss 17666407

Relevant External Links for RNF121 Gene

HapMap Linkage Disequilibrium report
RNF121

Disorders for RNF121 Gene

Relevant External Links for RNF121

Genetic Association Database (GAD)
RNF121
genes like me logo Genes that share disorders with RNF121: view

No data available for UniProtKB/Swiss-Prot for RNF121 Gene

Publications for RNF121 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for RNF121 Gene

Sources for RNF121 Gene

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