RNF11 Gene
protein-coding GIFtS: 49
GCID: GC01P051701
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ring finger protein 11
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Aliases for RNF11 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb) About This Section
|
| Aliases |
|---|
| Ring Finger Protein 111 2 | | CGI-1231 | | MGC511691 | | Sid1669p1 | | SID16692 |
Export aliases for RNF11 gene to outside databasesPrevious GC identifers: GC01P051328 GC01P050590 GC01P051061 GC01P051071 GC01P051413 GC01P051474 GC01P049819 |
Summaries for RNF11 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| Entrez Gene summary for RNF11: The protein encoded by this gene contains a RING-H2 finger motif, which is known to be important for protein-proteininteractions. The expression of this gene has been shown to be induced by mutant RET proteins (MEN2A/MEN2B). Thegermline mutations in RET gene are known to be responsible for the development of multiple endocrine neoplasia (MEN).(provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: RNF11_HUMAN, Q9Y3C5Function: Essential component of a ubiquitin-editing protein complex, comprising also TNFAIP3, ITCH and TAX1BP1, thatensures the transient nature of inflammatory signaling pathways. Promotes the association of TNFAIP3 to RIPK1 afterTNF stimulation. TNFAIP3 deubiquitinates 'Lys-63' polyubiquitin chains on RIPK1 and catalyzes the formation of'Lys-48'-polyubiquitin chains. This leads to RIPK1 proteasomal degradation and consequently termination of the TNF- orLPS-mediated activation of NF-kappa-B. Recruits STAMBP to the E3 ubiquitin-ligase SMURF2 for ubiquitination, leadingto its degradation by the 26S proteasome Gene Wiki entry for RNF11
|
Genomic Views for RNF11 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics) About This Section
| RefSeq DNA sequence:- NC_000001.10 NC_018912.1 NT_032977.9
Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the RNF11 gene promoter: SRF SRF (504 AA) Egr-1 Lmo2 AP-2gamma CREB S8 deltaCREB ZID Ik-1 Other transcription factors
Search SABiosciences Chromatin IP Primers for RNF11
Epigenetics:
|  | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNF11 |
Genomic Location: Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 1p32 Ensembl cytogenetic band: 1p32.3 HGNC cytogenetic band: 1p32RNF11 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)

GeneLoc information about chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01P051701: view genomic region
(about GC identifiers)
Start:
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51,701,943 bp from pter |
End:
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51,739,127 bp from pter |
Size:
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37,185 bases |
Orientation:
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plus strand |
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Proteins for RNF11 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
| UniProtKB/Swiss-Prot: RNF11_HUMAN, Q9Y3C5 (See
protein sequence)Recommended Name: RING finger protein 11 Size: 154 amino acids; 17444 Da
Subunit: Interacts (when phosphorylated) with 14-3-3. Interacts with the E3 ubiquitin-ligases NEDD4, ITCH, SMURF2 andWWP1 (By similarity). Also interacts with the E2 ubiquitin-conjugating enzymes UBE2D1 and UBE2N, but neither withCDC34, nor with UBE2L3. Interacts with ZNF350, EPS15 and STAMBP. After TNF stimulation, interacts with TAX1BP1,TNFAIP3 and RIPK1; these interaction are transient and they are lost after 1 hour of stimulation with TNF (Bysimilarity). Interacts with GGA1
Subcellular location: Early endosome. Recycling endosome. Cytoplasm. Nucleus. Note=Predominantly cytoplasmic, whenunphosphorylated, and nuclear, when phosphorylated by PKB/AKT1 (PubMed:16123141)
Secondary accessions: A8KAI2 Q5T7R8Explore the universe of human proteins at neXtProt for RNF11: NX_Q9Y3C5
Post-translational modifications:
Ubiquitinated in the presence of ITCH, or SMURF2, and UBE2D1, as well as WWP11
Phosphorylation by PKB/AKT1 may accelerate degradation by the proteasome1
May be acylated at Cys-4, possibly palmitoylated. Acylation at both Gly-2 and Cys-4 is required for proper localizationto the endosomes1
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9Y3C5 RNF11 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_055187.1 ENSEMBL proteins: ENSP00000242719 Human Recombinant Protein Products:
Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view): About this table
RNF11 for ontologies About GeneDecksing
RNF11 Antibody Products: Assay Products for RNF11: |
Protein
Domains / Families for RNF11 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
RNF11 for domains About GeneDecksing
2 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q9Y3C5ProtoNet protein and cluster: Q9Y3C5 1 Blocks protein family: IPB001841 Zn-finger
UniProtKB/Swiss-Prot: RNF11_HUMAN, Q9Y3C5Domain: The WW-binding motif mediates interaction with NEDD4 (By similarity)Similarity: Contains 1 RING-type zinc finger |
Function for RNF11 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
| Function Summary: UniProtKB/Swiss-Prot: RNF11_HUMAN, Q9Y3C5Function: Essential component of a ubiquitin-editing protein complex, comprising also TNFAIP3, ITCH and TAX1BP1, thatensures the transient nature of inflammatory signaling pathways. Promotes the association of TNFAIP3 to RIPK1 afterTNF stimulation. TNFAIP3 deubiquitinates 'Lys-63' polyubiquitin chains on RIPK1 and catalyzes the formation of'Lys-48'-polyubiquitin chains. This leads to RIPK1 proteasomal degradation and consequently termination of the TNF- orLPS-mediated activation of NF-kappa-B. Recruits STAMBP to the E3 ubiquitin-ligase SMURF2 for ubiquitination, leadingto its degradation by the 26S proteasome
Clone Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RNF11 (see all 2) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RNF11 OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
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In Situ Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNF11 |
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view): About this table
RNF11 for ontologies About GeneDecksing
3 GenomeRNAi human phenotypes for RNF11:
|
Pathways & Interactions for RNF11 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for RNF11
STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)
 5/94 Interacting proteins for RNF11 (Q9Y3C51, 2, 3 ENSP000002427194) via UniProtKB, MINT, STRING, and/or I2D (see all 94)| Interactant | Interaction Details |
|---|
| GeneCard | External ID(s) |
|---|
| ITCH | Q96J021, 2, 3, ENSP000003639984 | EBI-2129167,EBI-1564678 MINT-8012832 MINT-8012809 MINT-8012823 MINT-8012755 I2D:
score=6 STRING: ENSP00000363998 | | UBE2D2 | P628371, 2, 3, ENSP000003817174 | EBI-2129167,EBI-347677 MINT-60866 I2D:
score=6 STRING: ENSP00000381717 | | UBE2N | P610881, 2, 3, ENSP000003161764 | EBI-2129167,EBI-1052908 MINT-60857 I2D:
score=5 STRING: ENSP00000316176 | | UBB | P0CG471, 3, ENSP000003046974 | EBI-2129167,EBI-413034 I2D:
score=7 STRING: ENSP00000304697 | | UBA52 | P629872, 3, ENSP000003881074 | MINT-60882 I2D:
score=6 STRING: ENSP00000388107 | About this table
Gene Ontology (GO): 2 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process |
-- | -- | | GO:0042787 | protein ubiquitination involved in ubiquitin-dependent protein catabolic process |
IDA | 14755250 |
RNF11 for ontologies About GeneDecksing
|
Drugs & Compounds for RNF11 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
Browse Tocris compounds for RNF11 Search CenterWatch for drugs/clinical trials and news about RNF11 
|
Transcripts for RNF11 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
) About This Section
| REFSEQ mRNAs for RNF11 gene: NM_014372.4 Unigene Cluster for RNF11: Ring finger protein 11 Hs.309641 [show with all ESTs]Unigene Representative Sequence: NM_0143723 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000242719(uc001csi.4) ENST00000494873 ENST00000486691
Clone Products: |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RNF11 (see all 2) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RNF11 OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: RNF11 (NM_007148) | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RNF11 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RNF11  |
Additional cDNA sequence: AB024703.1 AF151881.1 AK293047.1 AK313140.1 AL049294.1 BC020964.2 BC036670.1 BC047654.1 12 DOTS entries: DT.456304 DT.100794446 DT.91988726 DT.91801048 DT.95213774 DT.121434903 DT.121434937 DT.91837319 DT.121434924 DT.92444668 DT.95122515 DT.95122516 24/333 AceView cDNA sequences (see all 333): H02233 AI351480 R82046 F03060 AA496311 AW675823 AI200551 BM832357 BQ084296 D55896 BI088410 BQ917992 R12081 AI277929 CK430429 AI375342 BQ878876 BC020964 AI360901 BQ694027 BQ436230 T36273 AI167368 BG170974 GeneLoc Exon Structure
|
Expression for RNF11 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| RNF11 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this imageBioGPS CGAP TAG: TATCTTGCTT
About this image See RNF11 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for RNF11
SOURCE GeneReport for Unigene cluster: Hs.309641 UniProtKB/Swiss-Prot: RNF11_HUMAN, Q9Y3C5Tissue specificity: Expressed at low levels in the lung, liver, kidney, pancreas, spleen, prostate, thymus, ovary,small intestine, colon, and peripheral blood lymphocytes, and, at intermediate levels, in the testis, heart, brain andplacenta. Highest expression in the skeletal muscle. In the brain, expressed at different levels in several regions:high levels in the amygdala, moderate in the hippocampus and thalamus, low in the caudate and extremely low levels inthe corpus callosum (at protein level). Restricted to neurons, enriched in somatodendritic compartments and excludedfrom white matter (at protein level). In substantia nigra, present in cell bodies and processes of dopaminergic andnondopaminergic cells (at protein level). In Parkinson disease, sequestered in Lewy bodies and neurites. Overexpressedin breast cancer cells, but not detected in the surrounding stroma and weakly, if at all, in normal breast epithelialcells (at protein level). Also expressed in several tumor cell lines SABiosciences Expression via Pathway-Focused PCR Array including RNF11:
Primer Products: |  | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RNF11 Browse OriGene validated miRNA SYBR primer pairs
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| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNF11 |
Orthologs for RNF11 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of eukaryotes.
Orthologs for RNF11 gene from 8/25 species (see all 25) About this table
ENSEMBL Gene Tree for RNF11 (if available) TreeFam Gene Tree for RNF11 (if available)  |
Paralogs for RNF11 gene(Paralogs according to
1HomoloGene, 2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68) About This Section
| Paralogs for RNF11 gene
- RNF62 RNF1652 RNF382 RLIM2 RNF442 RNF1112
RNF11 for paralogs About GeneDecksing
3 Pseudogenes.org Pseudogenes for RNF11 PGOHUM00000247448 PGOHUM00000240461 PGOHUM00000249531
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Genomic Variants for RNF11 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical significance | Chr 1 pos | Sequence | # | AA Chg | Type | More | # | Allele freq | Pop | Total sample | More |
|---|
HapMap Linkage Disequilibrium report for RNF11 (51701943 - 51739127 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for RNF11: --  | SABiosciences Cancer Mutation PCR Assays |
|  | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RNF11 |
|
Disorders
/ Diseases for RNF11 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
RNF11 for disorders About GeneDecksing
OMIM gene information: 612598
OMIM disorders: --
6 diseases for RNF11: About MalaCardsmultiple endocrine neoplasia corpus callosum parkinson's disease breast cancer prostatitis neuronitis Export disorders for RNF11 gene to outside databases
|
Publications for RNF11 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for RNF11 gene, integrated from 9 sources (see all 32): (articles sorted by number of sources associating them with RNF11) | |  | Utopia: connect your pdf to the dynamic world of online information |
- Cloning and expression profile of mouse and human genes, Rnf11/RNF11, encoding a novel RING-H2 finger protein. (PubMed id 10673045)1, 2, 3, 9 Seki N.... Saito T. (1999)
- Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. (PubMed id 10810093)1, 2, 3 Lai C.H....Lin W. (2000)
- PARK10 candidate RNF11 is expressed by vulnerable neurons and localizes to Lewy bodies in Parkinson disease brain. (PubMed id 17917589)1, 2, 9 Anderson L.R....Levey A.I. (2007)
- The RING-H2 protein RNF11 is overexpressed in breast cancer and is a target of Smurf2 E3 ligase. (PubMed id 14562029)1, 2, 9 Subramaniam V....Seth A. (2003)
- The WW domain containing E3 ubiquitin protein ligase 1 upregulates ErbB2 and EGFR through RING finger protein 11. (PubMed id 18724389)1, 2, 9 Chen C.... Seth A.K. (2008)
- Multiple modification and protein interaction signals drive the Ring finger protein 11 (RNF11) E3 ligase to the endosomal compartmen t. (PubMed id 20676133)1, 2 Santonico E....Castagnoli L. (2010)
- The ubiquitin-editing enzyme A20 requires RNF11 to downregulate NF- kappaB signalling. (PubMed id 19131965)1, 2 Shembade N.... Harhaj E.W. (2009)
- Analysis of electrostatic contributions to the selectivity of interactions between RING-finger domains and ubiquitin-conjugating enzymes. (PubMed id 18615712)1, 2 Scheper J....Thomson T.M. (2009)
- Molecular characterization of ring finger protein 11. (PubMed id 16123141)1, 2 Connor M.K.... Seth A.K. (2005)
- An RNF11: Smurf2 complex mediates ubiquitination of the AMSH protein. (PubMed id 14755250)1, 2 Li H. and Seth A. (2004)
|
External Searches for RNF11 gene
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing RNF11 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing RNF11 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing RNF11 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| PharmGKB entry for RNF11 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for RNF11 gene: Search GeneIP for patents involving RNF11
GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products for RNF11 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
|
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 |
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