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Aliases for RNF103-CHMP3 Gene

Aliases for RNF103-CHMP3 Gene

  • RNF103-CHMP3 Readthrough 2 3
  • RNF103-VPS24 Readthrough 2 3
  • RNF103-CHMP3 Read-Through 3
  • RNF103-CHMP3 Protein 3
  • RNF103-VPS24 3

External Ids for RNF103-CHMP3 Gene

Previous Symbols for RNF103-CHMP3 Gene

  • RNF103-VPS24

Summaries for RNF103-CHMP3 Gene

Entrez Gene Summary for RNF103-CHMP3 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring RNF103 (ring finger protein 103) and CHMP3 (charged multivesicular body protein 3) genes. The read-through transcript encodes a fusion protein that shares sequence identity with each individual gene product. [provided by RefSeq, Oct 2011]

GeneCards Summary for RNF103-CHMP3 Gene

RNF103-CHMP3 (RNF103-CHMP3 Readthrough) is a Protein Coding gene. Among its related pathways are Endocytosis and Internalization of ErbB1. An important paralog of this gene is CHMP3.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF103-CHMP3 Gene

Genomics for RNF103-CHMP3 Gene

Genomic Location for RNF103-CHMP3 Gene

Start:
86,503,430 bp from pter
End:
86,721,122 bp from pter
Size:
217,693 bases
Orientation:
Minus strand

Genomic View for RNF103-CHMP3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNF103-CHMP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF103-CHMP3 Gene

No data available for Regulatory Elements for RNF103-CHMP3 Gene

Proteins for RNF103-CHMP3 Gene

Post-translational modifications for RNF103-CHMP3 Gene

No Post-translational modifications

Other Protein References for RNF103-CHMP3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RNF103-CHMP3 Gene

Domains for RNF103-CHMP3 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for RNF103-CHMP3 Gene

Function for RNF103-CHMP3 Gene

Phenotypes for RNF103-CHMP3 Gene

GenomeRNAi human phenotypes for RNF103-CHMP3:
genes like me logo Genes that share phenotypes with RNF103-CHMP3: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNF103-CHMP3 Gene

Localization for RNF103-CHMP3 Gene

No data available for Gene Ontology (GO) - Cellular Components for RNF103-CHMP3 Gene

Pathways for RNF103-CHMP3 Gene

SuperPathways for RNF103-CHMP3 Gene

genes like me logo Genes that share pathways with RNF103-CHMP3: view

Pathways by source for RNF103-CHMP3 Gene

1 BioSystems pathway for RNF103-CHMP3 Gene
1 KEGG pathway for RNF103-CHMP3 Gene

Gene Ontology (GO) - Biological Process for RNF103-CHMP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007034 vacuolar transport --
genes like me logo Genes that share ontologies with RNF103-CHMP3: view

Transcripts for RNF103-CHMP3 Gene

mRNA/cDNA for RNF103-CHMP3 Gene

(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNF103-CHMP3 Gene

No ASD Table

Relevant External Links for RNF103-CHMP3 Gene

GeneLoc Exon Structure for
RNF103-CHMP3
ECgene alternative splicing isoforms for
RNF103-CHMP3

Expression for RNF103-CHMP3 Gene

mRNA expression in normal human tissues for RNF103-CHMP3 Gene

genes like me logo Genes that share expressions with RNF103-CHMP3: view

Orthologs for RNF103-CHMP3 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for RNF103-CHMP3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 100 (a)
OneToMany
cow
(Bos Taurus)
Mammalia -- 37
  • 71 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 37
  • 70 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Chmp3 37
  • 90 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 87 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 82 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 37
  • 87 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 68 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii chmp3 37
  • 79 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta vps24 37
  • 57 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea vps-24 37
  • 55 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes VPS24 37
  • 28 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 52 (a)
OneToMany
Species with no ortholog for RNF103-CHMP3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for RNF103-CHMP3 Gene

ENSEMBL:
Gene Tree for RNF103-CHMP3 (if available)
TreeFam:
Gene Tree for RNF103-CHMP3 (if available)

Paralogs for RNF103-CHMP3 Gene

Paralogs for RNF103-CHMP3 Gene

genes like me logo Genes that share paralogs with RNF103-CHMP3: view

Variants for RNF103-CHMP3 Gene

Sequence variations from dbSNP and Humsavar for RNF103-CHMP3 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs218061 -- 86,634,059(+) AGAGC(C/T)CCCCT intron-variant
rs308905 -- 86,565,701(+) tttcc(C/T)ggact intron-variant
rs308910 -- 86,628,731(+) gaacc(A/G)tttga intron-variant
rs308911 -- 86,628,854(+) cttct(A/G)ttgtt intron-variant
rs308912 -- 86,629,399(+) ttgtt(C/G)agatg intron-variant

Relevant External Links for RNF103-CHMP3 Gene

HapMap Linkage Disequilibrium report
RNF103-CHMP3

No data available for Structural Variations from Database of Genomic Variants (DGV) for RNF103-CHMP3 Gene

Disorders for RNF103-CHMP3 Gene

No disorders were found for RNF103-CHMP3 Gene.

No data available for UniProtKB/Swiss-Prot for RNF103-CHMP3 Gene

Publications for RNF103-CHMP3 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3
  2. Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality. (PMID: 24159190) SeppAolAo I. … LehtimAoki T. (Eur. Heart J. 2014) 3

Products for RNF103-CHMP3 Gene

Sources for RNF103-CHMP3 Gene

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