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Aliases for RNASEK-C17orf49 Gene

Subcategory (RNA class) for RNASEK-C17orf49 Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for RNASEK-C17orf49 Gene

  • RNASEK-C17orf49 Readthrough 2 3
  • RNASEK-C17orf49 Readthrough (Non-Protein Coding) 2

External Ids for RNASEK-C17orf49 Gene

Summaries for RNASEK-C17orf49 Gene

Entrez Gene Summary for RNASEK-C17orf49 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring RNASEK (ribonuclease, RNase K) and C17orf49 (chromosome 17 open reading frame 49) genes. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD) and is unlikely to produce a protein product. [provided by RefSeq, Jan 2011]

GeneCards Summary for RNASEK-C17orf49 Gene

RNASEK-C17orf49 (RNASEK-C17orf49 Readthrough) is an RNA Gene, and belongs to the ncRNA class. An important paralog of this gene is C17orf49.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNASEK-C17orf49 Gene

Genomics for RNASEK-C17orf49 Gene

Genomic Location for RNASEK-C17orf49 Gene

Start:
7,012,417 bp from pter
End:
7,017,524 bp from pter
Size:
5,108 bases
Orientation:
Plus strand

Genomic View for RNASEK-C17orf49 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNASEK-C17orf49 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNASEK-C17orf49 Gene

No data available for Regulatory Elements for RNASEK-C17orf49 Gene

Proteins for RNASEK-C17orf49 Gene

  • Protein details for RNASEK-C17orf49 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H0YIS7-H0YIS7
    Recommended name:
    Protein RNASEK-C17orf49
    Protein Accession:
    H0YIS7
    Secondary Accessions:

    Protein attributes for RNASEK-C17orf49 Gene

    Size:
    233 amino acids
    Molecular mass:
    24879 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RNASEK-C17orf49 Gene

Proteomics data for RNASEK-C17orf49 Gene at MOPED

Protein Expression for RNASEK-C17orf49 Gene

Post-translational modifications for RNASEK-C17orf49 Gene

No Post-translational modifications

Other Protein References for RNASEK-C17orf49 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for RNASEK-C17orf49 Gene

Domains for RNASEK-C17orf49 Gene

Protein Domains for RNASEK-C17orf49 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNASEK-C17orf49: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNASEK-C17orf49 Gene

Function for RNASEK-C17orf49 Gene

Gene Ontology (GO) - Molecular Function for RNASEK-C17orf49 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding --
GO:0003682 chromatin binding --
genes like me logo Genes that share ontologies with RNASEK-C17orf49: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNASEK-C17orf49 Gene

Localization for RNASEK-C17orf49 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNASEK-C17orf49 Gene

Pathways for RNASEK-C17orf49 Gene

SuperPathways for RNASEK-C17orf49 Gene

No Data Available

Interacting Proteins for RNASEK-C17orf49 Gene

Gene Ontology (GO) - Biological Process for RNASEK-C17orf49 Gene

None

No data available for Pathways by source for RNASEK-C17orf49 Gene

Transcripts for RNASEK-C17orf49 Gene

mRNA/cDNA for RNASEK-C17orf49 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNASEK-C17orf49 Gene

No ASD Table

Relevant External Links for RNASEK-C17orf49 Gene

GeneLoc Exon Structure for
RNASEK-C17orf49
ECgene alternative splicing isoforms for
RNASEK-C17orf49

Expression for RNASEK-C17orf49 Gene

Integrated Proteomics: protein expression from for RNASEK-C17orf49 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RNASEK-C17orf49 Gene

Orthologs for RNASEK-C17orf49 Gene

This gene was present in the common ancestor of animals.

Orthologs for RNASEK-C17orf49 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia BAP18 36
  • 93 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 92 (a)
OneToMany
mouse
(Mus musculus)
Mammalia 0610010K14Rik 36
  • 91 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 63 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii zgc:103508 36
  • 66 (a)
ManyToMany
zgc:92664 36
  • 63 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta CG33695 36
  • 22 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea Y43F8C.6 36
  • 11 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.3343 36
  • 31 (a)
OneToMany
Species with no ortholog for RNASEK-C17orf49:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for RNASEK-C17orf49 Gene

ENSEMBL:
Gene Tree for RNASEK-C17orf49 (if available)
TreeFam:
Gene Tree for RNASEK-C17orf49 (if available)

Paralogs for RNASEK-C17orf49 Gene

Paralogs for RNASEK-C17orf49 Gene

Selected SIMAP similar genes for RNASEK-C17orf49 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RNASEK-C17orf49: view

Variants for RNASEK-C17orf49 Gene

Relevant External Links for RNASEK-C17orf49 Gene

HapMap Linkage Disequilibrium report
RNASEK-C17orf49

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for RNASEK-C17orf49 Gene

Disorders for RNASEK-C17orf49 Gene

No disorders were found for RNASEK-C17orf49 Gene.

No data available for UniProtKB/Swiss-Prot for RNASEK-C17orf49 Gene

Publications for RNASEK-C17orf49 Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3
  4. An atlas of genetic influences on human blood metabolites. (PMID: 24816252) Shin S.Y. … Soranzo N. (Nat. Genet. 2014) 3

Products for RNASEK-C17orf49 Gene

Sources for RNASEK-C17orf49 Gene

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