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Aliases for RNASEH2B-AS1 Gene

Subcategory (RNA class) for RNASEH2B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RNASEH2B-AS1 Gene

  • RNASEH2B Antisense RNA 1 2 3 5
  • RNASEH2B Antisense RNA 1 (Non-Protein Coding) 2

External Ids for RNASEH2B-AS1 Gene

Previous GeneCards Identifiers for RNASEH2B-AS1 Gene

  • GC00U933985
  • GC13M051457

Summaries for RNASEH2B-AS1 Gene

GeneCards Summary for RNASEH2B-AS1 Gene

RNASEH2B-AS1 (RNASEH2B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNASEH2B-AS1 Gene

Genomics for RNASEH2B-AS1 Gene

Regulatory Elements for RNASEH2B-AS1 Gene

Enhancers for RNASEH2B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G050908 1.9 FANTOM5 Ensembl ENCODE dbSUPER 27.5 -2.4 -2350 10.0 HDGF FOXA2 CREB3L1 ARNT WRNIP1 SIN3A DMAP1 ZNF2 YY1 ZNF143 RNASEH2B RNASEH2B-AS1 DLEU7-AS1 DLEU7 KCNRG INTS6 GC13M050919
GH13G050121 2 FANTOM5 Ensembl ENCODE dbSUPER 23 +784.0 784008 10.1 CREB3L1 AGO1 FEZF1 DMAP1 ZNF143 ZNF263 SP3 NFYC TBX21 MEF2D DLEU1 RNASEH2B-AS1 CTAGE10P RNASEH2B KCNRG TRIM13 EBPL DLEU2 ARL11 ENSG00000274270
GH13G050890 1.6 FANTOM5 Ensembl ENCODE dbSUPER 18.3 +17.7 17730 4.9 SOX13 TBP FOXA2 MAX CHD7 ARID3A POLR2A EED RELB IKZF2 RNASEH2B-AS1 RNASEH2B DLEU7 DLEU7-AS1 KCNRG GC13P050857
GH13G050940 0.6 dbSUPER 27.1 -31.0 -30953 1.6 GATAD2A FOXA2 SIN3A HMG20A MNT FOXA1 TBX3 CTBP1 ZGPAT TCF7L2 RNASEH2B RNASEH2B-AS1 GC13P050938 GC13M050954 GC13M050955
GH13G050809 1 Ensembl ENCODE 15.5 +99.9 99850 2.1 FOXA2 TBL1XR1 ZSCAN4 POLR2A ETV6 RELB IKZF2 CREM MTA2 JUNB RNASEH2B-AS1 DLEU7 RNASEH2B GC13P050809 GC13M050813 RNA5SP28
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNASEH2B-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for RNASEH2B-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000062945 564 1601 HDGF CREB3L1 SIN3A DMAP1 ZNF2 YY1 ZNF207 SP3 MXD4 KAT8

Genomic Location for RNASEH2B-AS1 Gene

Chromosome:
13
Start:
50,862,172 bp from pter
End:
50,910,764 bp from pter
Size:
48,593 bases
Orientation:
Minus strand

Genomic View for RNASEH2B-AS1 Gene

Genes around RNASEH2B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNASEH2B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNASEH2B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNASEH2B-AS1 Gene

Proteins for RNASEH2B-AS1 Gene

Post-translational modifications for RNASEH2B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNASEH2B-AS1 Gene

Domains & Families for RNASEH2B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNASEH2B-AS1 Gene

Function for RNASEH2B-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNASEH2B-AS1 Gene

Localization for RNASEH2B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNASEH2B-AS1 Gene

Pathways & Interactions for RNASEH2B-AS1 Gene

SuperPathways for RNASEH2B-AS1 Gene

No Data Available

Interacting Proteins for RNASEH2B-AS1 Gene

Gene Ontology (GO) - Biological Process for RNASEH2B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNASEH2B-AS1 Gene

Drugs & Compounds for RNASEH2B-AS1 Gene

No Compound Related Data Available

Transcripts for RNASEH2B-AS1 Gene

mRNA/cDNA for RNASEH2B-AS1 Gene

(1) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RNASEH2B-AS1 Gene

RNASEH2B antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNASEH2B-AS1 Gene

No ASD Table

Relevant External Links for RNASEH2B-AS1 Gene

GeneLoc Exon Structure for
RNASEH2B-AS1
ECgene alternative splicing isoforms for
RNASEH2B-AS1

Expression for RNASEH2B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNASEH2B-AS1 Gene

SOURCE GeneReport for Unigene cluster for RNASEH2B-AS1 Gene:

Hs.741501
genes like me logo Genes that share expression patterns with RNASEH2B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNASEH2B-AS1 Gene

Orthologs for RNASEH2B-AS1 Gene

Evolution for RNASEH2B-AS1 Gene

ENSEMBL:
Gene Tree for RNASEH2B-AS1 (if available)
TreeFam:
Gene Tree for RNASEH2B-AS1 (if available)

No data available for Orthologs for RNASEH2B-AS1 Gene

Paralogs for RNASEH2B-AS1 Gene

No data available for Paralogs for RNASEH2B-AS1 Gene

Variants for RNASEH2B-AS1 Gene

Sequence variations from dbSNP and Humsavar for RNASEH2B-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs886041377 Pathogenic 50,910,079(+) GGCAT(A/G)GCCGC intron-variant, upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs112702177 Likely benign 50,909,867(+) CCCTC(C/G)CCTGG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs184573722 Uncertain significance 50,909,965(+) CGGTC(C/T)CTCAG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs553446261 Uncertain significance 50,909,960(+) GCTGC(C/G)GGTCC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs553965425 Uncertain significance 50,909,678(+) CTAGC(C/G)CGCTG intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for RNASEH2B-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv561618 CNV loss 21841781
nsv826645 CNV loss 20364138
nsv951085 CNV duplication 24416366

Relevant External Links for RNASEH2B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNASEH2B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNASEH2B-AS1 Gene

Disorders for RNASEH2B-AS1 Gene

Relevant External Links for RNASEH2B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNASEH2B-AS1

No disorders were found for RNASEH2B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNASEH2B-AS1 Gene

Publications for RNASEH2B-AS1 Gene

No publications were found for RNASEH2B-AS1 Gene.

Products for RNASEH2B-AS1 Gene

Sources for RNASEH2B-AS1 Gene

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