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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RNASE9 Gene

protein-coding   GIFtS: 43
GCID: GC14M021024

Ribonuclease, RNase A Family, 9 (Non-Active)

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Ribonuclease, RNase A Family, 9 (Non-Active)1 2     Ribonuclear Enzyme2
HEL1282     Ribonuclease 92
h4612     Ribonuclease-Like Protein 92
Inactive Ribonuclease-Like Protein 92     

External Ids:    HGNC: 206731   Entrez Gene: 3904432   Ensembl: ENSG000001886557   OMIM: 6140145   UniProtKB: P601533   

Export aliases for RNASE9 gene to outside databases

Previous GC identifers: GC14M020096 GC14M001145


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for RNASE9 Gene: 
RNASE9 (ribonuclease, RNase A family, 9 (non-active)) is a protein-coding gene. Diseases associated with RNASE9 include epididymitis, and pancreatitis. GO annotations related to this gene include pancreatic ribonuclease activity and nucleic acid binding.

UniProtKB/Swiss-Prot: RNAS9_HUMAN, P60153
Function: Does not exhibit any ribonuclease activity




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000014.8  NT_026437.12  NC_018925.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RNASE9 gene promoter:
         NF-YA   CBF-C   POU2F1   CBF-B   POU2F1b   POU2F1a   POU2F1c   CP1A   CP1C   NF-Y   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRNASE9 promoter sequence
   Search SABiosciences Chromatin IP Primers for RNASE9

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNASE9


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q11.2   Ensembl cytogenetic band:  14q11.2   HGNC cytogenetic band: 14q11.2

RNASE9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RNASE9 gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14M021024:  view genomic region     (about GC identifiers)

Start:
21,024,252 bp from pter      End:
21,029,090 bp from pter
Size:
4,839 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: RNAS9_HUMAN, P60153 (See protein sequence)
Recommended Name: Inactive ribonuclease-like protein 9 precursor  
Size: 205 amino acids; 24307 Da
Subcellular location: Secreted (Probable)
Secondary accessions: A2RQR8 A8QJS1 Q5GAN7 Q6KG53
Alternative splicing: 2 isoforms:  P60153-1   P60153-2   

Explore the universe of human proteins at neXtProt for RNASE9: NX_P60153

Explore proteomics data for RNASE9 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_P60153

  • RNASE9 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    RNASE9 Protein Expression
    REFSEQ proteins (7 alternative transcripts): 
    NP_001001673.2  NP_001103826.1  NP_001103827.1  NP_001103828.1  NP_001103829.1  NP_001103830.1  NP_001103831.1  

    ENSEMBL proteins: 
     ENSP00000340162   ENSP00000450599   ENSP00000450800   ENSP00000451565   ENSP00000384683  
     ENSP00000451160   ENSP00000451285   ENSP00000409504   ENSP00000450570   ENSP00000450987  

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    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region IEA--

    RNASE9 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    RNASE: Ribonucleases, RNase A

    2 InterPro protein domains:
     IPR023412 RNaseA_domain
     IPR001427 RNaseA

    Graphical View of Domain Structure for InterPro Entry P60153

    ProtoNet protein and cluster: P60153

    UniProtKB/Swiss-Prot: RNAS9_HUMAN, P60153
    Similarity: Belongs to the pancreatic ribonuclease family


    RNASE9 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: RNAS9_HUMAN, P60153
    Function: Does not exhibit any ribonuclease activity

         Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding IEA--
    GO:0004522pancreatic ribonuclease activity IEA--
         
    RNASE9 for ontologies           About GeneDecksing


    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for RNASE9 
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    Inhib. RNA
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section




    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RNASE9

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    EMD Millipore small molecules for RNASE9:
    Small Molecule - inhibitor
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for RNASE9 (RNAS9)

    Search CenterWatch for drugs/clinical trials and news about RNASE9 / RNAS9

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for RNASE9 gene (7 alternative transcripts): 
    NM_001001673.3  NM_001110356.1  NM_001110357.1  NM_001110358.1  NM_001110359.1  NM_001110360.1  NM_001110361.1  

    Unigene Cluster for RNASE9:

    Ribonuclease, RNase A family, 9 (non-active)
    Hs.533972
    Unigene Representative Sequence: EF061302
    10 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000338904(uc010ahu.3) ENST00000554964(uc010ahs.3) ENST00000555230
    ENST00000557068 ENST00000404716(uc010ahp.3) ENST00000556208(uc010ahq.3)
    ENST00000553541(uc010aho.3) ENST00000429244(uc010aht.3) ENST00000553706(uc001vxq.4)
    ENST00000557209(uc010ahr.3)
    miRNA
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    1 QIAGEN miScript miRNA Assays for microRNA that regulate RNASE9:
    hsa-miR-1205
    SwitchGear 3'UTR luciferase reporter plasmidRNASE9 3' UTR sequence
    Inhib. RNA
    Products:
         
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    OriGene RNAi products in human, mouse, rat for RNASE9
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    DNA2.0 Custom Codon Optimized Gene Synthesis Service for RNASE9
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RNASE9
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                         Customized lentivirus expression plasmids for stable overexpression of RNASE9 
    Primer
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RNASE9
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RNASE9

    Additional mRNA sequence: 

    AF382949.1 AY665804.1 AY907670.1 BC130311.1 BC130313.1 EF061296.1 EF061297.1 EF061298.1 
    EF061299.1 EF061300.1 EF061301.1 EF061302.1 EU414264.1 

    2 DOTS entries:

    DT.102831376  DT.120767661 

    2 AceView cDNA sequences:

    AF382949 NM_001001673 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    RNASE9 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CCTTGAATGT
    RNASE9 Expression
    About this image


    See RNASE9 Protein Expression from SPIRE MOPED and PaxDB
    SOURCE GeneReport for Unigene cluster: Hs.533972

    UniProtKB/Swiss-Prot: RNAS9_HUMAN, P60153
    Tissue specificity: At the mRNA level, widely expressed (PubMed:18992174). At protein level, restricted to
    epididymis (PubMed:19137000). Expressed in spermatozoa (sperm head and neck), with higher levels on ejaculated
    and epididymal sperm than on testicular sperm (at protein level). Expressed in the epithelial cells of the
    epididymal tubule (at protein level). Not detected in muscle

        SABiosciences Custom PCR Arrays for RNASE9
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNASE9

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of human and mouse.

    Orthologs for RNASE9 gene from 1/5 species (see all 5)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rnase91 , 5 ribonuclease, RNase A family, 9 (non-active)1, 5 56.26(n)1
    37.57(a)1
      14 (26.35 cM)5
    3284011  NM_183032.21  NP_898853.21 
     510384595 


    ENSEMBL Gene Tree for RNASE9 (if available)
    TreeFam Gene Tree for RNASE9 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/188 SNPs in RNASE9 are shown (see all 188)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 14 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1443865491,2
    --21023820(+) TCCTCC/TAGCCT 7 -- int10--------
    rs1148397721,2
    C--21023872(+) AGAAAA/GTGAGG 7 -- int10--------
    rs784608331,2
    C,F--21023891(+) TGTAGA/GTAATT 7 -- int12Minor allele frequency- G:0.05CSA WA 120
    rs2015538401,2
    C--21023997(+) CATTG-/GACGACTG 7 -- int10--------
    rs1829608051,2
    C--21024032(+) TTTCCC/TAAATA 7 -- int10--------
    rs1414041061,2
    --21024052(+) GTTATC/TCTGAG 7 -- int10--------
    rs1508167371,2
    C--21024111(+) AGTGAA/GATAGC 7 -- int10--------
    rs1165233621,2
    C,F--21024116(+) AATAGC/TCACAC 7 -- int11Minor allele frequency- T:0.05WA 118
    rs1117696581,2
    C,F--21024143(+) ATGTAT/CTGCAT 7 -- int12Minor allele frequency- C:0.04CSA WA 120
    rs1395302241,2
    C--21024174(+) AGTTCC/TGTTGG 7 -- int10--------

    HapMap Linkage Disequilibrium report for RNASE9 (21024252 - 21029090 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for RNASE9:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv901468CNV Gain21882294
    esv23438CNV Gain+Loss19812545

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    OMIM gene information: 614014    OMIM disorders: --

    2 diseases for RNASE9:    About MalaCards
    epididymitis    pancreatitis


    RNASE9 for disorders           About GeneDecksing

    Genetic Association Database (GAD): RNASE9

    Export disorders for RNASE9 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for RNASE9 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with RNASE9)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The ribonuclease A superfamily of mammals and birds: identifying new members and tracing evolutionary histories. (PubMed id 15676279)1, 2, 3 Cho S.... Zhang J. (2005)
    2. Cloning, expression and location of RNase9 in human epididymis. (PubMed id 18992174)1, 2, 9 Liu J....Wang W. (2008)
    3. A genome-wide search for loci interacting with known p rostate cancer risk-associated genetic variants. (PubMed id 22219177)1, 4 Tao S....Sun J. (2012)
    4. Discovery in silico and characterization in vitro of novel genes exclusively expressed in the mouse epididymis. (PubMed id 12920233)1, 3 Penttinen J....Poutanen M. (2003)
    5. The DNA sequence and analysis of human chromosome 14. (PubMed id 12508121)1, 2 Heilig R.... Weissenbach J. (2003)
    6. Human ribonuclease 9, a member of ribonuclease A superfamily, specifically expressed in epididymis, is a novel sperm-binding protein. (PubMed id 19137000)2, 9 Cheng G.Z....Shi G.X. (2009)
    7. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    8. LOC 390443 (RNase 9) on chromosome 14q11.2 is related to the RNase A superfamily and contains a unique amino-terminal preproteinlike sequence. (PubMed id 15974301)1 Devor E.J....Galbraith J.J. (2004)
    9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 390443 HGNC: 20673 AceView: h461 Ensembl:ENSG00000188655 euGenes: HUgn390443
    ECgene: RNASE9 H-InvDB: RNASE9

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for RNASE9 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for RNASE9 gene:
    Search GeneIP for patents involving RNASE9

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    Category
    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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