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RNASE9 Gene

protein-coding   GIFtS: 44
GCID: GC14M021024

Ribonuclease, RNase A Family, 9 (Non-Active)

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Ribonuclease, RNase A Family, 9 (Non-Active)1 2     Inactive Ribonuclease-Like Protein 92
HEL1282     Ribonuclear Enzyme2
RAK12     Ribonuclease A K12
h4612     RNAE95

External Ids:    HGNC: 206731   Entrez Gene: 3904432   Ensembl: ENSG000001886557   OMIM: 6140145   UniProtKB: P601533   

Export aliases for RNASE9 gene to outside databases

Previous GC identifers: GC14M020096 GC14M001145


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for RNASE9 Gene:
RNASE9 (ribonuclease, RNase A family, 9 (non-active)) is a protein-coding gene. Diseases associated with RNASE9 include epididymitis, and pancreatitis. GO annotations related to this gene include pancreatic ribonuclease activity and nucleic acid binding.

UniProtKB/Swiss-Prot: RNAS9_HUMAN, P60153
Function: Does not exhibit any ribonuclease activity




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000014.9  NT_026437.13  NC_018925.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the RNASE9 gene promoter:
         NF-YA   CBF-C   POU2F1   CBF-B   POU2F1b   POU2F1a   POU2F1c   CP1A   CP1C   NF-Y   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRNASE9 promoter sequence
   Search Chromatin IP Primers for RNASE9

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RNASE9


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q11.2   Ensembl cytogenetic band:  14q11.2   HGNC cytogenetic band: 14q11.2

RNASE9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RNASE9 gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14M021024:  view genomic region     (about GC identifiers)

Start:
21,024,252 bp from pter      End:
21,029,090 bp from pter
Size:
4,839 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: RNAS9_HUMAN, P60153 (See protein sequence)
Recommended Name: Inactive ribonuclease-like protein 9 precursor  
Size: 205 amino acids; 24307 Da
Secondary accessions: A2RQR8 A8QJS1 Q5GAN7 Q6KG53
Alternative splicing: 2 isoforms:  P60153-1   P60153-2   

Explore the universe of human proteins at neXtProt for RNASE9: NX_P60153

Explore proteomics data for RNASE9 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn131, Asn143
  • Modification sites at PhosphoSitePlus

  • See RNASE9 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (8 alternative transcripts): 
    NP_001001673.2  NP_001103826.1  NP_001103827.1  NP_001103828.1  NP_001103829.1  NP_001103830.1  NP_001103831.1  NP_001276039.1  

    ENSEMBL proteins: 
     ENSP00000340162   ENSP00000450599   ENSP00000450800   ENSP00000451565   ENSP00000384683  
     ENSP00000451160   ENSP00000451285   ENSP00000409504   ENSP00000450570   ENSP00000450987  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    RNASE: Ribonucleases, RNase A

    2 InterPro protein domains:
     IPR023412 RNaseA_domain
     IPR001427 RNaseA

    Graphical View of Domain Structure for InterPro Entry P60153

    ProtoNet protein and cluster: P60153

    UniProtKB/Swiss-Prot: RNAS9_HUMAN, P60153
    Similarity: Belongs to the pancreatic ribonuclease family


    RNASE9 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: RNAS9_HUMAN, P60153
    Function: Does not exhibit any ribonuclease activity

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding IEA--
    GO:0016892endoribonuclease activity, producing 3'-phosphomonoesters IEA--
         
    RNASE9 for ontologies           About GeneDecksing


    Animal Models:
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    SwitchGear 3'UTR luciferase reporter plasmidRNASE9 3' UTR sequence
    Inhib. RNA
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    RNAS9_HUMAN, P60153: Secreted (Probable)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    extracellular4
    cytosol1
    mitochondrion1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region IEA--

    RNASE9 for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for RNASE9
    Interactions:

        Search GeneGlobe Interaction Network for RNASE9

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for RNASE9 (RNAS9)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for RNASE9 gene (8 alternative transcripts): 
    NM_001001673.3  NM_001110356.1  NM_001110357.1  NM_001110358.1  NM_001110359.1  NM_001110360.1  NM_001110361.1  NM_001289110.1  

    Unigene Cluster for RNASE9:

    Ribonuclease, RNase A family, 9 (non-active)
    Hs.533972
    Unigene Representative Sequence: EF061302
    10 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000338904(uc010ahu.3) ENST00000554964(uc010ahs.3) ENST00000555230
    ENST00000557068 ENST00000404716(uc010ahp.3) ENST00000556208(uc010ahq.3)
    ENST00000553541(uc010aho.3) ENST00000429244(uc010aht.3) ENST00000553706(uc001vxq.4)
    ENST00000557209(uc010ahr.3)
    miRNA
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    1 qRT-PCR Assays for microRNA that regulate RNASE9:
    hsa-miR-1205
    SwitchGear 3'UTR luciferase reporter plasmidRNASE9 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat RNASE9
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    GenScript: all cDNA clones in your preferred vector (see all 7): RNASE9 (NM_001110361)
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat RNASE9
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      QuantiFast Probe-based Assays in human, mouse, rat RNASE9

    Additional mRNA sequence: 

    AF382949.1 AY665804.1 AY907670.1 BC130311.1 BC130313.1 EF061296.1 EF061297.1 EF061298.1 
    EF061299.1 EF061300.1 EF061301.1 EF061302.1 EU414264.1 

    2 DOTS entries:

    DT.120767661  DT.102831376 

    2 AceView cDNA sequences:

    NM_001001673 AF382949 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    RNASE9 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CCTTGAATGT
    RNASE9 Expression
    About this image

    RNASE9 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    RNASE9 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.533972

    UniProtKB/Swiss-Prot: RNAS9_HUMAN, P60153
    Tissue specificity: At the mRNA level, widely expressed (PubMed:18992174). At protein level, restricted to
    epididymis (PubMed:19137000). Expressed in spermatozoa (sperm head and neck), with higher levels on ejaculated
    and epididymal sperm than on testicular sperm (at protein level). Expressed in the epithelial cells of the
    epididymal tubule (at protein level). Not detected in muscle

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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNASE9

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and mouse.

    Orthologs for RNASE9 gene from Selected species (see all 5)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rnase91 , 5 ribonuclease, RNase A family, 9 (non-active)1, 5 55.95(n)1
    36.43(a)1
      14 (26.35 cM)5
    3284011  NM_183032.21  NP_898853.21 
     510384595 


    ENSEMBL Gene Tree for RNASE9 (if available)
    TreeFam Gene Tree for RNASE9 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for RNASE9 (see all 188)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 14 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1443865491,2
    --21023820(+) TCCTCC/TAGCCT 7 -- int10--------
    rs1148397721,2
    C--21023872(+) AGAAAA/GTGAGG 7 -- int10--------
    rs784608331,2
    C,F--21023891(+) TGTAGA/GTAATT 7 -- int12Minor allele frequency- G:0.05CSA WA 120
    rs2015538401,2
    C--21023997(+) CATTG-/GACGACTG 7 -- int10--------
    rs1829608051,2
    C--21024032(+) TTTCCC/TAAATA 7 -- int10--------
    rs1414041061,2
    --21024052(+) GTTATC/TCTGAG 7 -- int10--------
    rs1508167371,2
    C--21024111(+) AGTGAA/GATAGC 7 -- int10--------
    rs1165233621,2
    C,F--21024116(+) AATAGC/TCACAC 7 -- int11Minor allele frequency- T:0.05WA 118
    rs1117696581,2
    C,F--21024143(+) ATGTAT/CTGCAT 7 -- int12Minor allele frequency- C:0.04CSA WA 120
    rs1395302241,2
    C--21024174(+) AGTTCC/TGTTGG 7 -- int10--------

    HapMap Linkage Disequilibrium report for RNASE9 (21024252 - 21029090 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for RNASE9:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv901468CNV Gain21882294
    esv23438CNV Gain+Loss19812545

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing RNASE9
    DNA2.0 Custom Variant and Variant Library Synthesis for RNASE9

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 614014    OMIM disorders: --

    4 diseases for RNASE9:    
    About MalaCards
    epididymitis    pancreatitis    prostate cancer    prostatitis


    RNASE9 for disorders           About GeneDecksing

    Genetic Association Database (GAD): RNASE9

    Export disorders for RNASE9 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for RNASE9 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with RNASE9)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The ribonuclease A superfamily of mammals and birds: identifying new members and tracing evolutionary histories. (PubMed id 15676279)1, 2, 3 Cho S.... Zhang J. (Genomics 2005)
    2. Cloning, expression and location of RNase9 in human epididymis. (PubMed id 18992174)1, 2, 9 Liu J.... Wang W. (BMC Res. Notes 2008)
    3. A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. (PubMed id 22219177)1, 4 Tao S....Sun J. (Carcinogenesis 2012)
    4. Discovery in silico and characterization in vitro of novel genes exclusively expressed in the mouse epididymis. (PubMed id 12920233)1, 3 Penttinen J....Poutanen M. (Mol. Endocrinol. 2003)
    5. The DNA sequence and analysis of human chromosome 14. (PubMed id 12508121)1, 2 Heilig R.... Weissenbach J. (Nature 2003)
    6. Human ribonuclease 9, a member of ribonuclease A superfamily, specifically expressed in epididymis, is a novel sperm-binding protein. (PubMed id 19137000)2, 9 Cheng G.Z.... Shi G.X. (Asian J. Androl. 2009)
    7. Comparative genomic analysis of eutherian ribonuclease A genes. (PubMed id 24337645)1 Premzl M. (Mol. Genet. Genomics 2014)
    8. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    9. LOC 390443 (RNase 9) on chromosome 14q11.2 is related to the RNase A superfamily and contains a unique amino-terminal preproteinlike sequence. (PubMed id 15974301)1 Devor E.J....Galbraith J.J. (Hum. Biol. 2004)
    10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 390443 HGNC: 20673 AceView: h461 Ensembl:ENSG00000188655 euGenes: HUgn390443
    ECgene: RNASE9 H-InvDB: RNASE9

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for RNASE9 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for RNASE9 gene:
    Search GeneIP for patents involving RNASE9

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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