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Aliases for RNASE8 Gene

Aliases for RNASE8 Gene

  • Ribonuclease A Family Member 8 2 3 5
  • Ribonuclease, RNase A Family, 8 2 3
  • RNase 8, Placental 3
  • Ribonuclease 8 3
  • EC 3.1.27.5 61
  • EC 3.1.27.- 4
  • EC 3.1.27 61
  • RNase 8 4
  • RAE2 3

External Ids for RNASE8 Gene

Previous GeneCards Identifiers for RNASE8 Gene

  • GC14P018898
  • GC14P015313
  • GC14P019516
  • GC14P020595
  • GC14P021525
  • GC14P001647
  • GC14P021059
  • GC14P021060

Summaries for RNASE8 Gene

Entrez Gene Summary for RNASE8 Gene

  • The protein encoded by this gene belongs to the pancreatic ribonuclease family, a subset of the ribonuclease A superfamily. The protein is expressed prominently in the placenta and exhibits antimicrobial activity against pathogenic bacteria and fungi. [provided by RefSeq, Oct 2014]

GeneCards Summary for RNASE8 Gene

RNASE8 (Ribonuclease A Family Member 8) is a Protein Coding gene. Among its related pathways are Immune System. GO annotations related to this gene include nucleic acid binding and ribonuclease A activity. An important paralog of this gene is RNASE7.

UniProtKB/Swiss-Prot for RNASE8 Gene

  • Has a low ribonuclease activity.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNASE8 Gene

Genomics for RNASE8 Gene

Regulatory Elements for RNASE8 Gene

Enhancers for RNASE8 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F020591 0.4 FANTOM5 11.8 -466.0 -465951 0.1 ZFHX2 IKZF1 EGR2 OR4K17 OR6S1 RNASE12 OR11H6 OR4N5 OR11H4 RNASE8 EDDM3B RNASE9 RNASE13
GH14F021216 0.6 FANTOM5 2.2 +159.0 158969 0.3 TRAV8-5 OR10G2 OR5AU1 RNASE8 OR4E2 OR10G3 GC14P021210 GC14P021211 GC14P021259
GH14F021054 1.1 FANTOM5 ENCODE 0.8 -3.3 -3280 0.3 ATF1 MLX ZFP64 ARID4B DMAP1 ZNF48 YY1 SLC30A9 SP5 NFYC LOC105370398 RNASE8
GH14F021055 0.2 ENCODE 0.8 -2.0 -1979 1.0 MLX ARID4B DMAP1 ZNF48 YY1 SLC30A9 ZNF143 SP5 NFYC ZHX2 RNASE8 LOC105370398
GH14F021060 0.7 ENCODE 0.8 +3.1 3143 1.2 ATF1 MLX CREB3L1 ARID4B DMAP1 YY1 GATA2 SP5 MXD4 ZHX2 ARHGEF40 RNASE8
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNASE8 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNASE8 Gene

Chromosome:
14
Start:
21,057,822 bp from pter
End:
21,058,455 bp from pter
Size:
634 bases
Orientation:
Plus strand

Genomic View for RNASE8 Gene

Genes around RNASE8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNASE8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNASE8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNASE8 Gene

Proteins for RNASE8 Gene

  • Protein details for RNASE8 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TDE3-RNAS8_HUMAN
    Recommended name:
    Ribonuclease 8
    Protein Accession:
    Q8TDE3
    Secondary Accessions:
    • B2RPP6
    • B2RPP7

    Protein attributes for RNASE8 Gene

    Size:
    154 amino acids
    Molecular mass:
    17041 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RNASE8 Gene

Selected DME Specific Peptides for RNASE8 Gene

Q8TDE3:
  • LLLLLLGLWVA
  • CKDLNTFLH
  • TCQTPNI
  • LVPVHLD
  • LTSGKYPNCRYKE

Post-translational modifications for RNASE8 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RNASE8 Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains & Families for RNASE8 Gene

Gene Families for RNASE8 Gene

Protein Domains for RNASE8 Gene

Suggested Antigen Peptide Sequences for RNASE8 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8TDE3

UniProtKB/Swiss-Prot:

RNAS8_HUMAN :
  • Belongs to the pancreatic ribonuclease family.
Family:
  • Belongs to the pancreatic ribonuclease family.
genes like me logo Genes that share domains with RNASE8: view

Function for RNASE8 Gene

Molecular function for RNASE8 Gene

UniProtKB/Swiss-Prot Function:
Has a low ribonuclease activity.

Enzyme Numbers (IUBMB) for RNASE8 Gene

Gene Ontology (GO) - Molecular Function for RNASE8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0004518 nuclease activity IEA --
GO:0004519 endonuclease activity IEA --
GO:0004522 ribonuclease A activity IDA 11861908
GO:0016787 hydrolase activity IEA --
genes like me logo Genes that share ontologies with RNASE8: view
genes like me logo Genes that share phenotypes with RNASE8: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNASE8 Gene

Localization for RNASE8 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RNASE8 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RNASE8 Gene COMPARTMENTS Subcellular localization image for RNASE8 gene
Compartment Confidence
extracellular 5

Gene Ontology (GO) - Cellular Components for RNASE8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with RNASE8: view

Pathways & Interactions for RNASE8 Gene

SuperPathways for RNASE8 Gene

SuperPathway Contained pathways
1 Immune System
genes like me logo Genes that share pathways with RNASE8: view

Pathways by source for RNASE8 Gene

2 Reactome pathways for RNASE8 Gene

Interacting Proteins for RNASE8 Gene

Gene Ontology (GO) - Biological Process for RNASE8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0090305 nucleic acid phosphodiester bond hydrolysis IEA --
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA --
genes like me logo Genes that share ontologies with RNASE8: view

No data available for SIGNOR curated interactions for RNASE8 Gene

Transcripts for RNASE8 Gene

mRNA/cDNA for RNASE8 Gene

(1) REFSEQ mRNAs :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNASE8 Gene

No ASD Table

Relevant External Links for RNASE8 Gene

GeneLoc Exon Structure for
RNASE8
ECgene alternative splicing isoforms for
RNASE8

Expression for RNASE8 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNASE8 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNASE8 Gene:

RNASE8

SOURCE GeneReport for Unigene cluster for RNASE8 Gene:

Hs.553572

mRNA Expression by UniProt/SwissProt for RNASE8 Gene:

Q8TDE3-RNAS8_HUMAN
Tissue specificity: Expressed prominently in the placenta and is not detected in any other tissues examined.
genes like me logo Genes that share expression patterns with RNASE8: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for RNASE8 Gene

Orthologs for RNASE8 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNASE8 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RNASE8 34 35
  • 97.84 (n)
cow
(Bos Taurus)
Mammalia -- 35
  • 69 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 58 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 31 (a)
ManyToMany
chicken
(Gallus gallus)
Aves ANG 35
  • 27 (a)
ManyToMany
CL2 35
  • 26 (a)
ManyToMany
RSFR 35
  • 25 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 24 (a)
ManyToMany
-- 35
  • 21 (a)
ManyToMany
Species where no ortholog for RNASE8 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNASE8 Gene

ENSEMBL:
Gene Tree for RNASE8 (if available)
TreeFam:
Gene Tree for RNASE8 (if available)

Paralogs for RNASE8 Gene

Paralogs for RNASE8 Gene

(6) SIMAP similar genes for RNASE8 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with RNASE8: view

Variants for RNASE8 Gene

Sequence variations from dbSNP and Humsavar for RNASE8 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs10133968 -- 21,056,111(+) TCGGC(A/G)AATTT intron-variant, upstream-variant-2KB
rs10144810 -- 21,056,429(+) TAAAT(A/G)TAATG intron-variant, upstream-variant-2KB
rs10622766 -- 21,058,927(+) GCCCT(-/AAAA)GAAAC intron-variant, downstream-variant-500B
rs112589920 -- 21,058,214(+) CCATG(A/G)GTGAG intron-variant, reference, missense
rs112727634 -- 21,058,724(+) GGCTG(G/T)ACAGT intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for RNASE8 Gene

Variant ID Type Subtype PubMed ID
nsv1039369 CNV loss 25217958
nsv428293 CNV gain+loss 18775914
nsv826882 CNV gain 20364138
nsv832740 CNV gain 17160897

Variation tolerance for RNASE8 Gene

Residual Variation Intolerance Score: 78.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.75; 15.87% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RNASE8 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNASE8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RNASE8 Gene

Disorders for RNASE8 Gene

Relevant External Links for RNASE8

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNASE8

No disorders were found for RNASE8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNASE8 Gene

Publications for RNASE8 Gene

  1. RNase 8, a novel RNase A superfamily ribonuclease expressed uniquely in placenta. (PMID: 11861908) Zhang J. … Rosenberg H.F. (Nucleic Acids Res. 2002) 2 3 4 22 64
  2. Disulfide-bond reshuffling in the evolution of an ape placental ribonuclease. (PMID: 17116644) Zhang J. (Mol. Biol. Evol. 2007) 3 22 64
  3. Identification of RNase 8 as a novel human antimicrobial protein. (PMID: 16940129) Rudolph B. … Harder J. (Antimicrob. Agents Chemother. 2006) 3 22 64
  4. Genetic diversity of human RNase 8. (PMID: 22272736) Chan C.C. … Rosenberg H.F. (BMC Genomics 2012) 3 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for RNASE8 Gene

Sources for RNASE8 Gene

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