RNASE4 Gene
protein-coding GIFtS : 49
GCID: GC14 P021176
ribonuclease, RNase A family, 4
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Aliasesfor RNASE4 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Ribonuclease, RNase A Family, 4 1 2 RNS42 3 5 RNase 42 3 Ribonuclease 42 EC 3.1.27.-3 EC 3.1.278
Export aliases for RNASE4 gene to outside databases Previous GC identifers: GC14P018523 GC14P014939 GC14P019142 GC14P020222 GC14P021153 GC14P001274 GC14P021155 GC14P021157 GC14P021166 GC14P021170
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Summariesfor RNASE4 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for RNASE4 : The protein encoded by this gene belongs to the pancreatic ribonuclease family. It plays an important role in mRNA cleavage and has marked specificity towards the 3' side of uridine nucleotides. Alternative splicing results in two transcript variants encoding the same protein. This gene and the gene that encodes angiogenin share promoters and 5' exons. Each gene splices to a unique downstream exon that contains its complete coding region. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: RNAS4_HUMAN, P34096 Function : This RNase has marked specificity towards the 3' side of uridine nucleotidesGene Wiki entry for RNASE4 (Ribonuclease 4)
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Genomic Viewsfor RNASE4 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the RNASE4 gene promoter: COUP-TF1 AP-1 COUP HNF-4alpha2 Nkx2-5 HNF-4alpha1 COUP-TF deltaCREB STAT3 RSRFC4 Other transcription factors Search SABiosciences Chromatin IP Primers for RNASE4 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat RNASE4
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 14q11 Ensembl cytogenetic band: 14q11.2 HGNC cytogenetic band: 14q11 RNASE4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 14 GeneLoc Exon Structure
GeneLoc location for GC14P021176: view genomic region
(about GC identifiers )
Start:
21,152,372 bp from pter
End:
21,168,758 bp from pter
Size:
16,387 bases
Orientation:
plus strand
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Proteinsfor RNASE4 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: RNAS4_HUMAN, P34096 (See
protein sequence )Recommended Name: Ribonuclease 4 precursor Size : 147 amino acids; 16840 Da
Subcellular location : Secreted
2 PDB 3D structures from and Proteopedia for RNASE4 :1RNF (3D)
  2RNF (3D)
 Explore the universe of human proteins at neXtProt for RNASE4: NX_P34096
4 DME Specific Peptides for RNASE4 (P34096 ) RNASE4 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_002928.1 NP_919412.1 ENSEMBL proteins: ENSP00000381087 ENSP00000307096 ENSP00000381085 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
RNASE4 for ontologies About GeneDecksing RNASE4 Antibody Products: Assay Products for RNASE4:
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Protein
Domains / Familiesfor RNASE4 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
RNASE4 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P34096 ProtoNet protein and cluster: P34096
1 Blocks protein family : IPB001427 Pancreatic ribonuclease UniProtKB/Swiss-Prot: RNAS4_HUMAN, P34096 Similarity : Belongs to the pancreatic ribonuclease family
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Functionfor RNASE4 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: RNAS4_HUMAN, P34096 Function : This RNase has marked specificity towards the 3' side of uridine nucleotides
Genatlas biochemistry entry for RNASE4 : ribonuclease,RNAse A family,4,expressed in a number of human somatic tissues but not brain,with two alternatively spliced isoforms Enzyme Numbers (IUBMB): EC 3.1.27 2 EC 3.1.27.- 1 Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RNASE4 (see all 5 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RNASE4 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): RNASE4 (NM_002937 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RNASE4 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RNASE4
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNASE4
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
RNASE4 for ontologies About GeneDecksing
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Pathways & Interactionsfor RNASE4 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RNASE4 STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)1 Interacting protein for RNASE4 (ENSP00000307096 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
RNASE4 for ontologies About GeneDecksing
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Drugs & Compoundsfor RNASE4 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
RNASE4 for compounds About GeneDecksing Browse Tocris compounds for RNASE4 2 DrugBank Compounds for RNASE4 About this table 1 Novoseek chemical compound relationship for RNASE4 gene About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
uridine
65.3
2
9878400 (2)
Search CenterWatch for drugs/clinical trials and news about RNASE4 / RNAS4
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Transcriptsfor RNASE4 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for RNASE4 gene (3 alternative transcripts): NM_002937.3 NM_194431.1 NM_194430.1 3 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000398001 ENST00000304704 ENST00000397999 (uc001vya.3 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RNASE4 (see all 5 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RNASE4 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): RNASE4 (NM_002937 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RNASE4 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RNASE4
24/333 AceView cDNA sequences (see all 333 ):
BM800182 AI934356 AA862345 CA447209 NM_194430 CB154272 CK904582 BM785359 CB215920 R28749 BI759778 NM_194431 AI168617 BE856015 BQ009590 BG564488 AA027188 CB157060 BU620311 CF528880 BU552571 AA418935 BU732659 AA424174 GeneLoc Exon Structure 5/7 Alternative Splicing Database (ASD) splice patterns (SP) for RNASE4 (see all 7 ) About this scheme ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3a · 3b · 3c · 3d ^ 4a · 4b · 4c · 4d SP1 :         -   -     -   -   -           SP2 :         -   -   -   -   -   -           SP3 :         -   -                   SP4 :       -   -   -   -   -   -   -           SP5 :                            
ECgene alternative splicing isoforms for RNASE4
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Expression for RNASE4 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section RNASE4 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: --
About this image RNASE4 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See RNASE4 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for RNASE4 SABiosciences Custom PCR Arrays for RNASE4 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for RNASE4Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat RNASE4 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat RNASE4 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat RNASE4 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNASE4
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Orthologsfor RNASE4 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for RNASE4 gene from 3/10 species (see all 10 ) About this table
ENSEMBL Gene Tree for RNASE4 (if available)TreeFam Gene Tree for RNASE4 (if available)
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Paralogsfor RNASE4 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for RNASE4 gene RNASE3 2 RNASE7 2 RNASE8 2 ANG 2 RNASE6 2 RNASE1 2 RNASE2 2 ENSG00000258818 2 4 SIMAP similar genes for RNASE4 using alignment to 1 protein entry: RNAS4_HUMAN :RNASE1 ANG RNASE7 RNASE6
RNASE4 for paralogs About GeneDecksing
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Genomic Variantsfor RNASE4 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 14 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for RNASE4 (21152372 - 21168758 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 8 variations for RNASE4 8 CNVs : 87129 87128 76572 76571 87130 76570 87131 71865
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing RNASE4
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Disorders
/ Diseasesfor RNASE4 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
RNASE4 for disorders About GeneDecksing
OMIM gene information: 601030
OMIM disorders : --6 diseases for RNASE4 : About MalaCards pancreatitis colon carcinoma hepatocellular carcinoma obesity carcinoma hypoxia Human Genome Epidemiology (HuGE) Navigator: RNASE4 (15 documents) Export disorders for RNASE4 gene to outside databases
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Publicationsfor RNASE4 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for RNASE4 gene, integrated from 9 sources (see all 19 ): (articles sorted by number of sources associating them with RNASE4) Utopia : connect your pdf to the dynamic world of online information
Human ribonuclease 4 (RNase 4): coding sequence, chromosomal localization and identification of two distinct transcripts in human somatic tissues. (PubMed id 7501448) 1 , 2 , 3, 9 Rosenberg H.F. and Dyer K.D. (1995) The three-dimensional structure of human RNase 4, unliganded and complexed with d(Up), reveals the basis for its uridine selectivity. (PubMed id 9878400) 1 , 2 , 9 Terzyan S.S.... Coll M. (1999) The amino acid sequence of human ribonuclease 4, a highly conserved ribonuclease that cleaves specifically on the 3' side of uridine. (PubMed id 8223579) 1 , 2 , 9 Zhou H.-M. and Strydom D.J. (1993) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Molecular cloning and expression of human ribonuclease 4 cDNA. (PubMed id 7742370) 1 , 2 Seno M....Yamada H. (1995) Isolation and characterization of a human colon carcinoma-secreted enzyme with pancreatic ribonuclease-like activity. (PubMed id 3467790) 1 , 2 Shapiro R.... Vallee B.L. (1986) Ribonucleases and host defense: identification, localization and gene expression in adherent monocytes in vitro. (PubMed id 9366257) 1 , 9 Egesten A....Rosenberg H.F. (1997) Use of genome-wide expression data to mine the ' Gray Zone' of GWA studies leads to novel candidate obesity genes. (PubMed id 20532202) 1 Naukkarinen J....Peltonen L. (2010) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 Ota T.... Sugano S. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for RNASE4 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing RNASE4 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing RNASE4 gene
(According to HUGE )
About This Section --
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Specialized Databases showing RNASE4 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for RNASE4 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for RNASE4 gene: Search GeneIP for patents involving RNASE4 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor RNASE4 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for RNASE4 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for RNASE4 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for RNASE4 OriGene Protein Over-expression Lysate for RNASE4 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for RNASE4 OriGene 3'-UTR Clone for RNASE4 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RNASE4 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RNASE4 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for RNASE4 OriGene Custom Protein Services for RNASE4 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RNASE4 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing RNASE4 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat RNASE4 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat RNASE4 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat RNASE4 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat RNASE4
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RNASE4 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNASE4
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RNASE4
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