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Aliases for RNASE4 Gene

Aliases for RNASE4 Gene

  • Ribonuclease, RNase A Family, 4 2 3
  • RNS4 3 4 6
  • RNase 4 3 4
  • Ribonuclease A B1 3
  • Ribonuclease 4 3
  • EC 3.1.27.- 4
  • EC 3.1.27 64
  • RAB1 3

External Ids for RNASE4 Gene

Summaries for RNASE4 Gene

Entrez Gene Summary for RNASE4 Gene

  • The protein encoded by this gene belongs to the pancreatic ribonuclease family. It plays an important role in mRNA cleavage and has marked specificity towards the 3' side of uridine nucleotides. Alternative splicing results in four transcript variants encoding the same protein. This gene and the gene that encodes angiogenin share promoters and 5' exons. Each gene splices to a unique downstream exon that contains its complete coding region. [provided by RefSeq, Aug 2013]

GeneCards Summary for RNASE4 Gene

RNASE4 (Ribonuclease, RNase A Family, 4) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding and ribonuclease A activity. An important paralog of this gene is ANG.

UniProtKB/Swiss-Prot for RNASE4 Gene

  • This RNase has marked specificity towards the 3 side of uridine nucleotides

Gene Wiki entry for RNASE4 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNASE4 Gene

Genomics for RNASE4 Gene

Genomic Location for RNASE4 Gene

Start:
20,684,100 bp from pter
End:
20,701,215 bp from pter
Size:
17,116 bases
Orientation:
Plus strand

Genomic View for RNASE4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNASE4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNASE4 Gene

Regulatory Elements for RNASE4 Gene

Proteins for RNASE4 Gene

  • Protein details for RNASE4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P34096-RNAS4_HUMAN
    Recommended name:
    Ribonuclease 4
    Protein Accession:
    P34096
    Secondary Accessions:

    Protein attributes for RNASE4 Gene

    Size:
    147 amino acids
    Molecular mass:
    16840 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for RNASE4 Gene

neXtProt entry for RNASE4 Gene

Proteomics data for RNASE4 Gene at MOPED

Selected DME Specific Peptides for RNASE4 Gene

Post-translational modifications for RNASE4 Gene

No Post-translational modifications

Other Protein References for RNASE4 Gene

Domains for RNASE4 Gene

Gene Families for RNASE4 Gene

HGNC:
  • RNASE :Ribonucleases, RNase A

Protein Domains for RNASE4 Gene

UniProtKB/Swiss-Prot:

RNAS4_HUMAN
Family:
  • Belongs to the pancreatic ribonuclease family.:
    • P34096
genes like me logo Genes that share domains with RNASE4: view

Function for RNASE4 Gene

Molecular function for RNASE4 Gene

GENATLAS Biochemistry: ribonuclease,RNAse A family,4,expressed in a number of human somatic tissues but not brain,with two alternatively spliced isoforms
UniProtKB/Swiss-Prot Function: This RNase has marked specificity towards the 3 side of uridine nucleotides

Enzyme Numbers (IUBMB) for RNASE4 Gene

Gene Ontology (GO) - Molecular Function for RNASE4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0004519 endonuclease activity IBA --
GO:0004522 ribonuclease A activity NAS 7742370
GO:0004540 ribonuclease activity IBA --
genes like me logo Genes that share ontologies with RNASE4: view

miRNA for RNASE4 Gene

miRTarBase miRNAs that target RNASE4

No data available for Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for RNASE4 Gene

Localization for RNASE4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RNASE4 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RNASE4 Gene COMPARTMENTS Subcellular localization image for RNASE4 gene
Compartment Confidence
extracellular 5

Gene Ontology (GO) - Cellular Components for RNASE4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IDA 3467790
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with RNASE4: view

Pathways for RNASE4 Gene

SuperPathways for RNASE4 Gene

No Data Available

Interacting Proteins for RNASE4 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000381081%0d%0a9606.ENSP00000344193%0d%0a
Selected Interacting proteins: ENSP00000381081 for RNASE4 Gene via STRING

Symbol External ID(s) Details
RNASE1

Gene Ontology (GO) - Biological Process for RNASE4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006379 mRNA cleavage NAS 7742370
GO:0009267 cellular response to starvation IEA --
GO:0090501 RNA phosphodiester bond hydrolysis IBA --
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic NAS 7742370
genes like me logo Genes that share ontologies with RNASE4: view

No data available for Pathways by source for RNASE4 Gene

Compounds for RNASE4 Gene

(2) Drugbank Compounds for RNASE4 Gene

Compound Synonyms Cas Number Type Actions PubMed IDs
Citric Acid
77-92-9 target
Pyroglutamic Acid
98-79-3 target

(1) Novoseek inferred chemical compound relationships for RNASE4 Gene

Compound -log(P) Hits PubMed IDs
uridine 65.3 2
genes like me logo Genes that share compounds with RNASE4: view

Transcripts for RNASE4 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for RNASE4 Gene

No ASD Table

Relevant External Links for RNASE4 Gene

GeneLoc Exon Structure for
RNASE4
ECgene alternative splicing isoforms for
RNASE4

Expression for RNASE4 Gene

mRNA expression in normal human tissues for RNASE4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for RNASE4 Gene

genes like me logo Genes that share expressions with RNASE4: view

Orthologs for RNASE4 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNASE4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RNASE4 36
  • 99.77 (n)
  • 99.32 (a)
RNASE4 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RNASE4 36
  • 89.5 (n)
  • 88.36 (a)
RNASE4 37
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RNASE4 36
  • 83.87 (n)
  • 84.68 (a)
RNASE4 37
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rnase4 36
  • 84.47 (n)
  • 84.25 (a)
Rnase4 16
Rnase4 37
  • 83 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RNASE4 37
  • 66 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RNASE4 37
  • 69 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rnase4 36
  • 81.05 (n)
  • 82.88 (a)
chicken
(Gallus gallus)
Aves ANG 37
  • 33 (a)
ManyToMany
CL2 37
  • 29 (a)
ManyToMany
RSFR 37
  • 35 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 34 (a)
ManyToMany
-- 37
  • 41 (a)
ManyToMany
Species with no ortholog for RNASE4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNASE4 Gene

ENSEMBL:
Gene Tree for RNASE4 (if available)
TreeFam:
Gene Tree for RNASE4 (if available)

Paralogs for RNASE4 Gene

Paralogs for RNASE4 Gene

Selected SIMAP similar genes for RNASE4 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with RNASE4: view

Variants for RNASE4 Gene

Sequence variations from dbSNP and Humsavar for RNASE4 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs3094 -- 20,699,896(+) AGCTG(C/T)CCCAG utr-variant-3-prime
rs944438 -- 20,696,468(+) GGAAA(A/G)AGAAG intron-variant
rs1888560 -- 20,696,086(+) ATCAT(C/T)GCTGC intron-variant
rs1888561 -- 20,696,349(+) TTCTA(C/T)CACAA intron-variant
rs1888562 -- 20,696,377(+) TAAAA(C/T)GTCAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RNASE4 Gene

Variant ID Type Subtype PubMed ID
esv23438 CNV Gain+Loss 19812545
nsv1203 CNV Loss 18451855

Relevant External Links for RNASE4 Gene

HapMap Linkage Disequilibrium report
RNASE4

Disorders for RNASE4 Gene

Relevant External Links for RNASE4

Genetic Association Database (GAD)
RNASE4
Human Genome Epidemiology (HuGE) Navigator
RNASE4
genes like me logo Genes that share disorders with RNASE4: view

No data available for UniProtKB/Swiss-Prot for RNASE4 Gene

Publications for RNASE4 Gene

  1. Human ribonuclease 4 (RNase 4): coding sequence, chromosomal localization and identification of two distinct transcripts in human somatic tissues. (PMID: 7501448) Rosenberg H.F. … Dyer K.D. (Nucleic Acids Res. 1995) 2 3 4 23
  2. The amino acid sequence of human ribonuclease 4, a highly conserved ribonuclease that cleaves specifically on the 3' side of uridine. (PMID: 8223579) Zhou H.-M. … Strydom D.J. (Eur. J. Biochem. 1993) 3 4 23
  3. The three-dimensional structure of human RNase 4, unliganded and complexed with d(Up), reveals the basis for its uridine selectivity. (PMID: 9878400) Terzyan S.S. … Coll M. (J. Mol. Biol. 1999) 3 4 23
  4. Ribonucleases and host defense: identification, localization and gene expression in adherent monocytes in vitro. (PMID: 9366257) Egesten A. … Rosenberg H.F. (Biochim. Biophys. Acta 1997) 3 23
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for RNASE4 Gene

  • antibodies-online proteins for RNASE4
  • antibodies-online antibodies for RNASE4
  • antibodies-online kits for RNASE4

Sources for RNASE4 Gene

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