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RNASE13 Gene

protein-coding   GIFtS: 33
GCID: GC14M021500

Ribonuclease, RNase A Family, 13 (Non-Active)

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Ribonuclease, RNase A Family, 13 (Non-Active)1 2     Probable Inactive Ribonuclease-Like Protein 132
HEL-S-86p2     Ribonuclease 132
RAL12     Ribonuclease A L12
Epididymis Secretory Sperm Binding Protein Li 86p2     Ribonuclease-Like Protein 132

External Ids:    HGNC: 252851   Entrez Gene: 4401632   Ensembl: ENSG000002061507   UniProtKB: Q5GAN33   

Export aliases for RNASE13 gene to outside databases

Previous GC identifers: GC14M020571 GC14M001621


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for RNASE13 Gene:
RNASE13 (ribonuclease, RNase A family, 13 (non-active)) is a protein-coding gene. GO annotations related to this gene include pancreatic ribonuclease activity and nucleic acid binding.

UniProtKB/Swiss-Prot: RNS13_HUMAN, Q5GAN3
Function: Does not exhibit any ribonuclease activity (Potential)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the RNASE13 gene promoter:
         TBP   Spz1   RP58   Nkx2-5   PPAR-alpha   CREB   PPAR-gamma1   c-Rel   deltaCREB   PPAR-gamma2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRNASE13 promoter sequence
   Search Chromatin IP Primers for RNASE13

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RNASE13


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q11.1   Ensembl cytogenetic band:  14q11.2   HGNC cytogenetic band: 14q11.1

RNASE13 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RNASE13 gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14M021500:  view genomic region     (about GC identifiers)

Start:
21,500,979 bp from pter      End:
21,502,944 bp from pter
Size:
1,966 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: RNS13_HUMAN, Q5GAN3 (See protein sequence)
Recommended Name: Probable inactive ribonuclease-like protein 13 precursor  
Size: 156 amino acids; 17845 Da

Explore the universe of human proteins at neXtProt for RNASE13: NX_Q5GAN3

Explore proteomics data for RNASE13 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn126

  • See RNASE13 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001012264.1  
    ENSEMBL proteins: 
     ENSP00000372410  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    RNASE: Ribonucleases, RNase A

    2 InterPro protein domains:
     IPR023412 RNaseA_domain
     IPR001427 RNaseA

    Graphical View of Domain Structure for InterPro Entry Q5GAN3

    ProtoNet protein and cluster: Q5GAN3

    UniProtKB/Swiss-Prot: RNS13_HUMAN, Q5GAN3
    Similarity: Belongs to the pancreatic ribonuclease family


    Find genes that share domains with RNASE13           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: RNS13_HUMAN, Q5GAN3
    Function: Does not exhibit any ribonuclease activity (Potential)

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding IEA--
    GO:0016892endoribonuclease activity, producing 3'-phosphomonoesters IEA--
         
    Find genes that share ontologies with RNASE13           About GenesLikeMe


    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for RNASE13

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    RNS13_HUMAN, Q5GAN3: Secreted (Probable)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    extracellular4

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region IEA--

    Find genes that share ontologies with RNASE13           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for RNASE13
    Interactions:

        Search GeneGlobe Interaction Network for RNASE13

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for RNASE13 (RNS13)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for RNASE13 gene: 
    NM_001012264.3  

    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000382951(uc001vzj.3)
    miRNA
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    3 AceView cDNA sequences:

    BC044831 AI027773 BI828869 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    RNASE13 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    RNASE13 Expression
    About this image

    RNASE13 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    RNASE13 Protein Expression
        Custom PCR Arrays for RNASE13
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    In Situ
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNASE13

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and mouse.

    Orthologs for RNASE13 gene from Selected species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rnase131 , 5 ribonuclease, RNase A family, 13 (non-active)1, 5 77.56(n)1
    71.24(a)1
      14 (26.73 cM)5
    4970711  NM_001011687.21  NP_001011687.11 
     519221605 


    ENSEMBL Gene Tree for RNASE13 (if available)
    TreeFam Gene Tree for RNASE13 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for RNASE13 (see all 118)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 14 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1873311771,2
    --21500946(+) CTGAAA/GAAAAA 1 -- ds50010--------
    rs1917338781,2
    --21500947(+) TGAAGA/TAAAAG 1 -- ds50010--------
    rs1817897761,2
    --21501046(+) CAGAGA/GGGGCT 1 -- ut310--------
    rs19525251,2
    C,F,A,H--21501049(+) AGGGGG/TCTCGT 1 -- ut3110Minor allele frequency- T:0.38NA WA CSA EA 373
    rs37483461,2
    C,F,A--21501095(+) TTACAT/CACTCA 1 -- ut31 ese313Minor allele frequency- C:0.43NA NS WA CSA EA 452
    rs1855451001,2
    --21501135(+) AGAGCC/TGGGCC 1 -- ut310--------
    rs37483471,2
    C,F--21501151(+) CATTCG/TCTGCC 1 -- ut31 ese36Minor allele frequency- T:0.07NS CSA WA NA EA 433
    rs37483481,2
    C,F,A,H--21501195(+) TGGGAG/AGAGCT 1 -- ut3125Minor allele frequency- A:0.30EA NS NA WA CSA 3357
    rs1902619541,2
    --21501199(+) AGGAGC/GTTCTG 1 -- ut310--------
    rs617359451,2
    C,F--21501229(+) ACCTCT/GGGGGA 1 -- ut312Minor allele frequency- G:0.02NS NA 198

    HapMap Linkage Disequilibrium report for RNASE13 (21500979 - 21502944 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for RNASE13:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv832740CNV Gain17160897
    nsv428293CNV Gain+Loss18775914

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for RNASE13 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with RNASE13)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The ribonuclease A superfamily of mammals and birds: identifying new members and tracing evolutionary histories. (PubMed id 15676279)1, 2 Cho S.... Zhang J. (Genomics 2005)
    2. Comparative genomic analysis of eutherian ribonuclease A genes. (PubMed id 24337645)1 Premzl M. (Mol. Genet. Genomics 2014)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 440163 HGNC: 25285 AceView: LOC440163 Ensembl:ENSG00000206150 euGenes: HUgn440163
    ECgene: RNASE13 H-InvDB: RNASE13

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for RNASE13 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for RNASE13 gene:
    Search GeneIP for patents involving RNASE13

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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     genOway: Develop your customized and physiologically relevant rodent model for RNASE13
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     antibodies-online proteins for RNASE13 (3 products)
           
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