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RNASE10 Gene

protein-coding   GIFtS: 40
GCID: GC14P021037

Ribonuclease, RNase A Family, 10 (Non-Active)

  See RNASE10-related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Ribonuclease, RNase A Family, 10 (Non-Active)1 2
RAH12
RNASE92
Inactive Ribonuclease-Like Protein 102
Ribonuclease A H12

External Ids:    HGNC: 192751   Entrez Gene: 3388792   Ensembl: ENSG000001825457   UniProtKB: Q5GAN63   

Export aliases for RNASE10 gene to outside databases

Previous GC identifers: GC14P020049 GC14P021022 GC14P001099 GC14P021023 GC14P021027 GC14P021030 GC14P021034


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for RNASE10 Gene:
RNASE10 (ribonuclease, RNase A family, 10 (non-active)) is a protein-coding gene. Diseases associated with RNASE10 include orchitis. GO annotations related to this gene include pancreatic ribonuclease activity and nucleic acid binding.

UniProtKB/Swiss-Prot: RNS10_HUMAN, Q5GAN6
Function: Secreted proximal epididymal protein required for post-testicular sperm maturation and male fertility.
May be involved in sperm adhesion to the egg zona pellucida. Does not have ribonuclease activity (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000014.9  NT_026437.13  NC_018925.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the RNASE10 gene promoter:
         NF-1   NF-1/L   USF1   AML1a   USF2   USF-1:USF-2   USF-1   PPAR-gamma2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRNASE10 promoter sequence
   Search Chromatin IP Primers for RNASE10

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RNASE10


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q11.2   Ensembl cytogenetic band:  14q11.2   HGNC cytogenetic band: 14q11.1

RNASE10 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RNASE10 gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14P021037:  view genomic region     (about GC identifiers)

Start:
20,973,696 bp from pter      End:
20,979,328 bp from pter
Size:
5,633 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: RNS10_HUMAN, Q5GAN6 (See protein sequence)
Recommended Name: Inactive ribonuclease-like protein 10 precursor  
Size: 216 amino acids; 24008 Da
Secondary accessions: A2RUQ3 B4DKY4
Alternative splicing: 2 isoforms:  Q5GAN6-1   Q5GAN6-2   

Explore the universe of human proteins at neXtProt for RNASE10: NX_Q5GAN6

Explore proteomics data for RNASE10 at MOPED

Post-translational modifications: 

  • The N-terminus is blocked. Glycosylated (By similarity)1
  • Modification sites at neXtProt

  • See RNASE10 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001012993.1  
    ENSEMBL proteins: 
     ENSP00000392996   ENSP00000333358  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    RNASE: Ribonucleases, RNase A

    2 InterPro protein domains:
     IPR023412 RNaseA_domain
     IPR001427 RNaseA

    Graphical View of Domain Structure for InterPro Entry Q5GAN6

    ProtoNet protein and cluster: Q5GAN6

    UniProtKB/Swiss-Prot: RNS10_HUMAN, Q5GAN6
    Similarity: Belongs to the pancreatic ribonuclease family


    Find genes that share domains with RNASE10           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: RNS10_HUMAN, Q5GAN6
    Function: Secreted proximal epididymal protein required for post-testicular sperm maturation and male fertility.
    May be involved in sperm adhesion to the egg zona pellucida. Does not have ribonuclease activity (By similarity)

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding IEA--
    GO:0016892endoribonuclease activity, producing 3'-phosphomonoesters IEA--
         
    Find genes that share ontologies with RNASE10           About GenesLikeMe


    Phenotypes:
         6 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Rnase10):
     endocrine/exocrine gland  hematopoietic system  homeostasis/metabolism  immune system  reproductive system 
     skeleton 

    Find genes that share phenotypes with RNASE10           About GenesLikeMe

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for RNASE10
       inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for RNASE10

       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for RNASE10
       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for RNASE10

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    miRTarBase miRNAs that target RNASE10:
    hsa-let-7b-5p (MIRT052197)

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    RNS10_HUMAN, Q5GAN6: Secreted (By similarity)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    extracellular3

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region IEA--

    Find genes that share ontologies with RNASE10           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for RNASE10
    Interactions:

        Search GeneGlobe Interaction Network for RNASE10

    Gene Ontology (GO): 5 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007338single fertilization IEA--
    GO:0022409positive regulation of cell-cell adhesion ISS--
    GO:0034113heterotypic cell-cell adhesion ISS--
    GO:0080154regulation of fertilization ISS--
    GO:1902093positive regulation of sperm motility ISS--

    Find genes that share ontologies with RNASE10           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for RNASE10 (RNS10)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for RNASE10 gene: 
    NM_001012975.1  

    Unigene Cluster for RNASE10:

    Ribonuclease, RNase A family, 10 (non-active)
    Hs.451057
    Unigene Representative Sequence: AK296766
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000430083(uc001vxp.2) ENST00000328444(uc010tlj.2)
    miRNA
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      QuantiTect SYBR Green Assays in human, mouse, rat RNASE10
      QuantiFast Probe-based Assays in human, mouse, rat RNASE10

    Additional mRNA sequence: 

    AK296766.1 AY665805.1 BC133002.1 BC133028.1 

    1 DOTS entry:

    DT.99970749 

    1 AceView cDNA sequence:

    BQ938117 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    RNASE10 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AAGCGCCAGT
    RNASE10 Expression
    About this image

    RNASE10 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    RNASE10 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.451057
        Custom PCR Arrays for RNASE10
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RNASE10

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and mouse.

    Orthologs for RNASE10 gene from Selected species (see all 5)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rnase101 , 5 ribonuclease, RNase A family, 10 (non-active)1, 5 76.65(n)1
    68.12(a)1
      14 (26.34 cM)5
    750191  NM_001162863.11  NP_001156335.11 
     510077515 


    ENSEMBL Gene Tree for RNASE10 (if available)
    TreeFam Gene Tree for RNASE10 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for RNASE10 (see all 95)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 14 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1496780371,2
    C--20976723(+) ATAGCC/TGCAAA 1 -- us2k10--------
    rs1835192481,2
    --20976785(+) AGTGCC/TCCGTT 1 -- us2k10--------
    rs1896373141,2
    --20976835(+) GGGGGA/GAAAAA 1 -- us2k10--------
    rs1812352561,2
    --20976836(+) GGGGGA/GAAAAC 1 -- us2k10--------
    rs80167341,2
    C,A--20976841(+) aaaaaC/Tatgct 1 -- us2k17Minor allele frequency- T:0.33WA NA CSA 246
    rs1868813071,2
    --20976944(+) TAATAC/TATATT 1 -- us2k10--------
    rs1455054801,2
    --20976947(+) TATATA/GTTACT 1 -- us2k10--------
    rs1918279401,2
    --20976977(+) TGTAGA/GTATGT 1 -- us2k10--------
    rs780425631,2
    C,F--20977100(+) CATACG/TTTTAT 1 -- us2k11Minor allele frequency- T:0.50WA 2
    rs1435106821,2
    --20977286(+) GCACCA/CTCTTG 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for RNASE10 (20973696 - 20979328 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for RNASE10:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv23438CNV Gain+Loss19812545

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing RNASE10
    DNA2.0 Custom Variant and Variant Library Synthesis for RNASE10

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    1 disease for RNASE10:    
    About MalaCards
    orchitis

    1 disease from the University of Copenhagen DISEASES database for RNASE10:
    Orchitis

    Find genes that share disorders with RNASE10           About GenesLikeMe

    Genetic Association Database (GAD): RNASE10

    Export disorders for RNASE10 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for RNASE10 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with RNASE10)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The ribonuclease A superfamily of mammals and birds: identifying new members and tracing evolutionary histories. (PubMed id 15676279)1, 2 Cho S.... Zhang J. (Genomics 2005)
    2. Discovery in silico and characterization in vitro of novel genes exclusively expressed in the mouse epididymis. (PubMed id 12920233)1, 3 Penttinen J....Poutanen M. (Mol. Endocrinol. 2003)
    3. Comparative genomic analysis of eutherian ribonuclease A genes. (PubMed id 24337645)1 Premzl M. (Mol. Genet. Genomics 2014)
    4. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PubMed id 17903296)4 Kiel D.P....Karasik D. (BMC Med. Genet. 2007)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    6. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)
    7. The DNA sequence and analysis of human chromosome 14. (PubMed id 12508121)2 Heilig R.... Weissenbach J. (Nature 2003)
    8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 338879 HGNC: 19275 AceView: LOC338879 Ensembl:ENSG00000182545 euGenes: HUgn338879
    ECgene: RNASE10 H-InvDB: RNASE10

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for RNASE10 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for RNASE10 gene:
    Search GeneIP for patents involving RNASE10

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014

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