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Aliases for RNASE1 Gene

Aliases for RNASE1 Gene

  • Ribonuclease A Family Member 1, Pancreatic 2 3 5
  • Ribonuclease, RNase A Family, 1 (Pancreatic) 2 3
  • Ribonuclease 1 3 4
  • RNase UpI-1 3 4
  • EC 3.1.27.5 4 61
  • HP-RNase 3 4
  • RNase 1 3 4
  • RNase A 3 4
  • RIB-1 3 4
  • RNS1 3 4
  • RIB1 3 4
  • Ribonuclease Pancreatic 3
  • Ribonuclease A C1 3
  • Ribonuclease A 4
  • RAC1 3

External Ids for RNASE1 Gene

Previous HGNC Symbols for RNASE1 Gene

  • RNS1

Previous GeneCards Identifiers for RNASE1 Gene

  • GC14M018641
  • GC14M015056
  • GC14M019259
  • GC14M020339
  • GC14M021269
  • GC14M001390

Summaries for RNASE1 Gene

Entrez Gene Summary for RNASE1 Gene

  • This gene encodes a member of the pancreatic-type of secretory ribonucleases, a subset of the ribonuclease A superfamily. The encoded endonuclease cleaves internal phosphodiester RNA bonds on the 3'-side of pyrimidine bases. It prefers poly(C) as a substrate and hydrolyzes 2',3'-cyclic nucleotides, with a pH optimum near 8.0. The encoded protein is monomeric and more commonly acts to degrade ds-RNA over ss-RNA. Alternative splicing occurs at this locus and four transcript variants encoding the same protein have been identified. [provided by RefSeq, Jul 2008]

GeneCards Summary for RNASE1 Gene

RNASE1 (Ribonuclease A Family Member 1, Pancreatic) is a Protein Coding gene. Diseases associated with RNASE1 include St. Louis Encephalitis. GO annotations related to this gene include nucleic acid binding and ribonuclease A activity. An important paralog of this gene is RNASE4.

UniProtKB/Swiss-Prot for RNASE1 Gene

  • Endonuclease that catalyzes the cleavage of RNA on the 3 side of pyrimidine nucleotides. Acts on single-stranded and double-stranded RNA.

Gene Wiki entry for RNASE1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNASE1 Gene

Genomics for RNASE1 Gene

Regulatory Elements for RNASE1 Gene

Enhancers for RNASE1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14G020714 1.3 FANTOM5 Ensembl ENCODE 11.2 +87.9 87872 2.5 CTCF NFIB FEZF1 ZEB2 ZNF394 ZIC2 OSR2 RBAK IKZF1 SCRT2 EDDM3A RNASE6 EDDM3B RNASE1 ANG ARHGEF40 PNP TEP1 TMEM55B GC14M020723
GH14G020807 0.9 ENCODE dbSUPER 12.4 -4.5 -4509 0.1 HDAC1 PKNOX1 FOXA2 FEZF1 DPF2 TCF12 ARID1B PRDM6 NFIC IKZF1 RNASE1 GC14P020814
GH14G020779 0.9 ENCODE 11.4 +21.2 21229 4.2 TBP PKNOX1 TBL1XR1 ZNF48 ZBTB40 ZNF121 FOS RELB ETV6 IKZF2 RNASE1 ENSG00000258810 RNASE6
GH14G020855 0.9 ENCODE 11.2 -52.6 -52559 0.2 PKNOX1 ARID4B SIN3A RAD21 CHAMP1 GATA2 ZNF207 ZNF143 ZNF654 MIER1 RNASE1 EDDM3A ENSG00000259130 GC14P020814
GH14G020705 0.9 Ensembl ENCODE 10.9 +96.1 96147 2.6 SREBF1 CTBP1 ZNF766 RAD51 GATA2 ZHX2 FOS TEAD3 EDDM3A ANG EDDM3B RNASE1 METTL17 ZNF219 TPPP2 ENSG00000255472 RNASE13 RNA5SP382
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNASE1 on UCSC Golden Path with GeneCards custom track

Promoters for RNASE1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000066407 1078 801 HDGF PKNOX1 ATF1 ARID4B ZNF2 ZNF766 ELK1 ZNF143 ZNF207 SP3
ENSR00000273608 1778 201 PKNOX1 MLX ARID4B DMAP1 ZBTB7B YY1 SLC30A9 ZNF766 ZNF143 ZNF207

Genomic Location for RNASE1 Gene

Chromosome:
14
Start:
20,801,228 bp from pter
End:
20,803,278 bp from pter
Size:
2,051 bases
Orientation:
Minus strand

Genomic View for RNASE1 Gene

Genes around RNASE1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNASE1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNASE1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNASE1 Gene

Proteins for RNASE1 Gene

  • Protein details for RNASE1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P07998-RNAS1_HUMAN
    Recommended name:
    Ribonuclease pancreatic
    Protein Accession:
    P07998
    Secondary Accessions:
    • B2R589
    • D3DS06
    • Q16830
    • Q16869
    • Q1KHR2
    • Q6ICS5
    • Q9UCB4
    • Q9UCB5

    Protein attributes for RNASE1 Gene

    Size:
    156 amino acids
    Molecular mass:
    17644 Da
    Quaternary structure:
    • Monomer. Interacts with and forms tight 1:1 complexes with RNH1. Dimerization of two such complexes may occur. Interaction with RNH1 inhibits this protein.

    Three dimensional structures from OCA and Proteopedia for RNASE1 Gene

neXtProt entry for RNASE1 Gene

Selected DME Specific Peptides for RNASE1 Gene

P07998:
  • RRNMTQG
  • CRLTNGS
  • IIVACEG
  • PYVPVHFD
  • ESRAKKFQRQH
  • VNTFVHE
  • LVLGWVQPSLG
  • CKPVNTF
  • MHITDCR
  • QEKVTCKNG
  • TYCNQMM
  • KFQRQHMD
  • VPVHFDA

Post-translational modifications for RNASE1 Gene

  • N-linked glycans are of complex type.
  • Glycosylation at Asn62, isoforms=104, and isoforms=116
  • Modification sites at PhosphoSitePlus

Other Protein References for RNASE1 Gene

Antibody Products

  • Abcam antibodies for RNASE1
  • Cloud-Clone Corp. Antibodies for RNASE1

Domains & Families for RNASE1 Gene

Gene Families for RNASE1 Gene

Protein Domains for RNASE1 Gene

Suggested Antigen Peptide Sequences for RNASE1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P07998

UniProtKB/Swiss-Prot:

RNAS1_HUMAN :
  • Belongs to the pancreatic ribonuclease family.
Family:
  • Belongs to the pancreatic ribonuclease family.
genes like me logo Genes that share domains with RNASE1: view

Function for RNASE1 Gene

Molecular function for RNASE1 Gene

GENATLAS Biochemistry:
ribonuclease RNAse A family,1,secretory,pancreatic with a dimeric mutant selectively cytotoxic for malignant cells
UniProtKB/Swiss-Prot CatalyticActivity:
Endonucleolytic cleavage to nucleoside 3-phosphates and 3-phosphooligonucleotides ending in Cp or Up with 2,3-cyclic phosphate intermediates.
UniProtKB/Swiss-Prot Function:
Endonuclease that catalyzes the cleavage of RNA on the 3 side of pyrimidine nucleotides. Acts on single-stranded and double-stranded RNA.

Enzyme Numbers (IUBMB) for RNASE1 Gene

Gene Ontology (GO) - Molecular Function for RNASE1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0004518 nuclease activity IEA --
GO:0004519 endonuclease activity IEA,IBA --
GO:0004522 ribonuclease A activity IEA,TAS --
GO:0004540 ribonuclease activity IBA --
genes like me logo Genes that share ontologies with RNASE1: view
genes like me logo Genes that share phenotypes with RNASE1: view

Animal Model Products

CRISPR Products

miRNA for RNASE1 Gene

miRTarBase miRNAs that target RNASE1

Inhibitory RNA Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RNASE1 Gene

Localization for RNASE1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RNASE1 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RNASE1 gene
Compartment Confidence
extracellular 5
cytosol 2
nucleus 1

Gene Ontology (GO) - Cellular Components for RNASE1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with RNASE1: view

Pathways & Interactions for RNASE1 Gene

SuperPathways for RNASE1 Gene

No Data Available

Interacting Proteins for RNASE1 Gene

Gene Ontology (GO) - Biological Process for RNASE1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0090305 nucleic acid phosphodiester bond hydrolysis IEA --
GO:0090501 RNA phosphodiester bond hydrolysis IEA --
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA --
genes like me logo Genes that share ontologies with RNASE1: view

No data available for Pathways by source and SIGNOR curated interactions for RNASE1 Gene

Drugs & Compounds for RNASE1 Gene

(62) Drugs for RNASE1 Gene - From: DrugBank, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Guanidine Approved Pharma Target 0
Isopropyl alcohol Approved Pharma Target 0
L-Aspartic acid Approved Nutra Target 0
1-(2,5-dideoxy-5-pyrrolidin-1-yl-beta-L-erythro-pentofuranosyl)-5-methylpyrimidine-2,4(1H,3H)-dione Experimental Pharma Target 0
1-(2-Deoxy-2-Fluoro-3-O-Phosphono-Beta-L-Ribofuranosyl)Pyrimidine-2,4(1h,3h)-Dione Experimental Pharma Target 0

(61) Additional Compounds for RNASE1 Gene - From: Novoseek and HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
2-Methylpropan-2-ol
  • 1,1-Dimethylethanol
  • 2-Methyl N-propan-2-ol
  • 2-Methyl-2-Propanol
  • 2-Methylpropan-2-ol
  • Alcohol, tert-butyl
75-65-0
genes like me logo Genes that share compounds with RNASE1: view

Transcripts for RNASE1 Gene

Unigene Clusters for RNASE1 Gene

Ribonuclease, RNase A family, 1 (pancreatic):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNASE1 Gene

ExUns: 1a · 1b ^ 2a · 2b · 2c ^ 3a · 3b · 3c · 3d
SP1: -
SP2: - -
SP3: - - -
SP4:

Relevant External Links for RNASE1 Gene

GeneLoc Exon Structure for
RNASE1
ECgene alternative splicing isoforms for
RNASE1

Expression for RNASE1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNASE1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RNASE1 Gene

This gene is overexpressed in Pancreas (x5.1).

Protein differential expression in normal tissues from HIPED for RNASE1 Gene

This gene is overexpressed in Urine (18.3), Cerebrospinal fluid (14.0), Plasma (10.5), Saliva (7.7), and Pancreatic juice (6.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for RNASE1 Gene



NURSA nuclear receptor signaling pathways regulating expression of RNASE1 Gene:

RNASE1

SOURCE GeneReport for Unigene cluster for RNASE1 Gene:

Hs.78224

mRNA Expression by UniProt/SwissProt for RNASE1 Gene:

P07998-RNAS1_HUMAN
Tissue specificity: Pancreas and other tissues and body fluids (indicating it may have other physiological functions besides its role in digestion).

Evidence on tissue expression from TISSUES for RNASE1 Gene

  • Pancreas(4.7)
  • Nervous system(4.4)
  • Urine(4.2)
  • Lung(3.7)
  • Stomach(3.3)
  • Heart(2.8)
  • Spleen(2.6)
  • Adrenal gland(2.4)
  • Gall bladder(2.4)
  • Kidney(2.3)
  • Muscle(2.2)
  • Eye(2)
  • Liver(2)
  • Lymph node(2)
genes like me logo Genes that share expression patterns with RNASE1: view

No data available for Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNASE1 Gene

Orthologs for RNASE1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNASE1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RNASE1 34 35
  • 98.72 (n)
mouse
(Mus musculus)
Mammalia Rnase1 34 16 35
  • 81.06 (n)
cow
(Bos Taurus)
Mammalia RNASE1 34 35
  • 78.97 (n)
SRN 35
  • 74 (a)
OneToMany
BRN 35
  • 65 (a)
OneToMany
dog
(Canis familiaris)
Mammalia LOC475395 34
  • 75.39 (n)
RNASE1 35
  • 64 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rnase1 34
  • 75 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 61 (a)
OneToMany
-- 35
  • 43 (a)
OneToMany
-- 35
  • 38 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 32 (a)
ManyToMany
chicken
(Gallus gallus)
Aves RSFR 35
  • 32 (a)
ManyToMany
CL2 35
  • 31 (a)
ManyToMany
ANG 35
  • 29 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 41 (a)
ManyToMany
-- 35
  • 30 (a)
ManyToMany
Species where no ortholog for RNASE1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNASE1 Gene

ENSEMBL:
Gene Tree for RNASE1 (if available)
TreeFam:
Gene Tree for RNASE1 (if available)

Paralogs for RNASE1 Gene

Paralogs for RNASE1 Gene

(7) SIMAP similar genes for RNASE1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with RNASE1: view

Variants for RNASE1 Gene

Sequence variations from dbSNP and Humsavar for RNASE1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000195821 -- 20,804,296(+) CATAA(A/G)TAAGG intron-variant, upstream-variant-2KB
rs1000550363 -- 20,800,882(+) CACTT(A/C)TGGCT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1001354929 -- 20,803,509(+) GGGCT(-/GTTCTTATCTACA)GTAAC intron-variant, upstream-variant-2KB
rs1001553639 -- 20,802,766(+) GAAGC(A/G)GCACC intron-variant, upstream-variant-2KB
rs1001584779 -- 20,802,268(+) ACGAG(C/G)GTTTT intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for RNASE1 Gene

Variant ID Type Subtype PubMed ID
esv2759972 CNV gain+loss 17122850
nsv428293 CNV gain+loss 18775914

Variation tolerance for RNASE1 Gene

Residual Variation Intolerance Score: 79.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.33; 26.43% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RNASE1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNASE1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RNASE1 Gene

Disorders for RNASE1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for RNASE1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
st. louis encephalitis
  • neuroinvasive st. louis encephalitis virus infection
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for RNASE1

Genetic Association Database (GAD)
RNASE1
Human Genome Epidemiology (HuGE) Navigator
RNASE1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNASE1
genes like me logo Genes that share disorders with RNASE1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RNASE1 Gene

Publications for RNASE1 Gene

  1. Inhibition of human pancreatic ribonuclease by the human ribonuclease inhibitor protein. (PMID: 17350650) Johnson R.J. … Raines R.T. (J. Mol. Biol. 2007) 3 4 22 64
  2. Three-dimensional structure of a human pancreatic ribonuclease variant, a step forward in the design of cytotoxic ribonucleases. (PMID: 11021969) Pous J. … Coll M. (J. Mol. Biol. 2000) 3 4 22 64
  3. Primary structure of the coding part of the gene for human pancreatic ribonuclease and its chromosomal location. (PMID: 8588814) Kochetov A.V. … Rivkin M.I. (Bioorg. Khim. 1995) 2 3 4 64
  4. Development of genotyping methods for single nucleotide polymorphism in the human pancreatic ribonuclease gene (RNASE1) and their application to population studies. (PMID: 18219569) Ueki M. … Yasuda T. (Biochem. Genet. 2008) 3 22 64
  5. The solution structure and dynamics of human pancreatic ribonuclease determined by NMR spectroscopy provide insight into its remarkable biological activities and inhibition. (PMID: 18495155) KAPvAcr K.E. … Rico M. (J. Mol. Biol. 2008) 3 22 64

Products for RNASE1 Gene

Sources for RNASE1 Gene

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