RNA5SP96 Gene
RNA gene GIFtS: 11
GCID: GC02M069411
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RNA, 5S ribosomal pseudogene 96(Previous names: RNA, 5S ribosomal 96 )
(Previous symbol: RN5S96)
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Aliases
for RNA5SP96 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
Subcategory (RNA class): rRNA
Quality score for this RNA gene is 3
| Aliases |
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| RNA, 5S Ribosomal Pseudogene 961 2 | | RN5S961 2 | | RNA, 5S Ribosomal 961 |
Export aliases for RNA5SP96 gene to outside databases |
Summaries
for RNA5SP96 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
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Genomic Views
for RNA5SP96 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for RNA5SP96
Other transcription factors
Search SABiosciences Chromatin IP Primers for RNA5SP96
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNA5SP96 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Ensembl cytogenetic band: 2p13.3 HGNC cytogenetic band: 2p13.3RNA5SP96 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 2 GeneLoc Exon Structure GeneLoc location for GC02M069411: view genomic region
(about GC identifiers)
Start:
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69,409,029 bp from pter |
End:
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69,409,135 bp from pter |
Size:
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107 bases |
Orientation:
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minus strand |
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Proteins
for RNA5SP96 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB: --
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Protein
Domains /
Families
for RNA5SP96 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| -- |
Function
for RNA5SP96 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
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Pathways & Interactions
for RNA5SP96 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RNA5SP96
|
Drugs & Compounds
for RNA5SP96 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for RNA5SP96
Search CenterWatch for drugs/clinical trials and news about RNA5SP96 
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Transcripts
for RNA5SP96 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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1 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000516041(rRNA)
GeneLoc Exon Structure
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Expression
for RNA5SP96 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| Expression evidence for RNA5SP96:none
See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --
SABiosciences Custom PCR Arrays for RNA5SP96
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat RNA5SP96 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RNA5SP96 | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RNA5SP96 |
Orthologs
for RNA5SP96 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for RNA5SP96 (if available)
TreeFam Gene Tree for RNA5SP96 (if available) |
Paralogs
for RNA5SP96 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for RNA5SP96 gene
- RNA5SP2332 RNA5SP4062 RNA5SP2022 RNA5SP512 RNA5SP5132 RNA5SP882 RNA5SP3252 RNA5SP4132
- RNA5SP3822 RNA5SP3642 RNA5SP2412 RNA5SP4782 RNA5S152 RNA5SP1572 RNA5SP1152 RNA5SP4232
- RNA5SP3782 RNA5SP3382 RNA5SP202 RNA5SP302 RNA5SP1392 RNA5SP3422 RNA5SP3772 RNA5SP4682
- RNA5S172 RNA5SP1982 RNA5SP1992 RNA5SP5042 RNA5SP4322 RNA5SP1032 RNA5SP4852 RNA5SP4072
- RNA5SP2762 RNA5SP2612 RNA5SP1742 RNA5SP4112 RNA5SP1282 RNA5SP932 RNA5SP1312 RNA5SP2272
- RNA5SP1362 RNA5SP3872 RNA5SP4872 RNA5SP2592 RNA5SP4932 RNA5SP3542 RNA5SP252 RNA5SP1602
- RNA5SP1442 RNA5SP2692 RNA5SP5092 RNA5SP1232 RNA5S102 RNA5SP1672 RNA5SP3172 RNA5SP982
- RNA5SP4392 RNA5SP582 RNA5SP4422 RNA5SP4222 RNA5SP3592 RNA5SP4552 RNA5SP402 RNA5SP1792
- RNA5SP2422 RNA5SP3762 RNA5SP5032 RNA5SP4862 RNA5SP2322 RNA5SP5122 RNA5SP3122 RNA5SP3482
- RNA5SP4332 RNA5SP2032 RNA5SP502 RNA5SP3392 RNA5SP3282 RNA5SP2602 RNA5SP4772 RNA5S32
- RNA5SP2212 RNA5SP4672 RNA5SP3812 RNA5SP1452 RNA5SP1832 RNA5SP4032 RNA5SP1302 RNA5SP4922
- RNA5SP2582 RNA5SP222 RNA5SP422 RNA5SP4122 RNA5SP1692 RNA5SP4472 RNA5SP2752 RNA5SP3712
- RNA5SP4212 RNA5SP1022 RNA5SP3882 RNA5SP3332 RNA5SP2262 RNA5SP4102 RNA5SP4582 RNA5SP1012
- RNA5SP562 RNA5SP382 RNA5SP1682 RNA5SP1732 RNA5SP2042 RNA5SP2392 RNA5SP1222 RNA5SP1432
- RNA5SP3302 RNA5SP372 RNA5SP1822 RNA5SP1422 RNA5SP1122 RNA5SP2952 RNA5SP4662 RNA5SP282
- RNA5SP652 RNA5SP3622 RNA5SP602 RNA5SP2152 RNA5SP952 RNA5SP3662 RNA5SP4612 RNA5SP2462
- RNA5SP3132 RNA5SP4152 RNA5SP3892 RNA5SP4762 RNA5SP232 RNA5SP2282 RNA5SP1842 RNA5SP4302
- RNA5SP4042 RNA5SP2252 RNA5SP1062 RNA5SP4562 RNA5S12 RNA5SP2662 RNA5SP3272 RNA5SP3742
- RNA5SP4012 RNA5SP3472 RNA5SP4652 RNA5SP922 RNA5SP312 RNA5SP1502 RNA5SP4802 RNA5SP2742
- RNA5SP3082 RNA5SP2632 RNA5SP792 RNA5SP4532 RNA5SP2102 RNA5SP1052 RNA5SP2002 RNA5SP2832
- RNA5SP4952 RNA5SP3932 RNA5SP1972 ENSG000002012852 RNA5S132 RNA5SP2652 RNA5SP3162 RNA5SP4372
- RNA5SP1892 RNA5SP5112 RNA5SP3842 RNA5SP2842 RNA5SP2502 RNA5SP1912 RNA5SP642 ENSG000002391562
- RNA5S162 RNA5SP1902 RNA5SP4282 RNA5SP2492 RNA5SP672 RNA5SP2712 RNA5SP1252 RNA5SP3142
- RNA5SP2112 RNA5SP3832 RNA5SP3572 RNA5SP5012 RNA5SP482 RNA5SP4022 RNA5SP1132 RNA5SP3102
- RNA5SP1812 RNA5SP2482 RNA5SP1592 RNA5SP3652 RNA5SP5102 RNA5SP3462 RNA5SP4972 RNA5SP1412
- RNA5SP4312 RNA5SP1872 RNA5SP4482 RNA5SP1382 RNA5SP942 RNA5SP2292 RNA5SP2622 RNA5SP612
- RNA5SP3092 RNA5SP2242 ENSG000002125952 RNA5SP3672 RNA5SP2402 RNA5SP3342 RNA5SP2922 RNA5SP3982
- RNA5SP3512 RNA5SP2472 RNA5SP4942 RNA5SP212 RNA5SP812 RNA5SP2142 RNA5SP662 RNA5SP702
- RNA5SP3182 RNA5SP1042 RNA5SP1922 RNA5SP782 RNA5SP4082 RNA5SP412 RNA5SP4812 RNA5SP772
- RNA5SP4602 RNA5SP1192 RNA5SP4412 RNA5SP4142 RNA5SP1702 RNA5SP1142 RNA5SP892 RNA5SP5022
- RNA5SP4642 RNA5SP5202 RNA5SP2512 RNA5SP2012 RNA5SP802 RNA5SP3792 RNA5SP3012 RNA5SP4292
- RNA5SP1242 RNA5SP4722 RNA5SP3732 RNA5SP2342 RNA5SP262 RNA5SP2232 RNA5SP3682 RNA5SP2122
- RNA5SP4712 RNA5SP1582 RNA5SP2552 RNA5SP2522 RNA5SP762 RNA5SP3022 RNA5SP1492 RNA5SP1762
- RNA5SP192 RNA5SP1522 RNA5SP4902 RNA5SP5172 RNA5SP1082 RNA5SP4462 RNA5SP1352 RNA5SP4352
- RNA5SP1182 RNA5SP2172 RNA5SP5002 RNA5SP2932 RNA5SP3582 RNA5SP1632 RNA5SP4192 RNA5S112
- RNA5SP3992 RNA5SP1882 RNA5SP3242 RNA5SP2182 RNA5SP4542 RNA5SP4382 RNA5SP1402 RNA5SP2972
- RNA5SP4262 RNA5SP4162 RNA5SP692 RNA5SP2892 RNA5SP2812 RNA5SP712 RNA5SP4512 RNA5SP1802
- RNA5SP852 RNA5SP3912 RNA5SP2192 RNA5S52 RNA5SP2672 RNA5SP1112 RNA5SP3152 RNA5SP2942
- RNA5SP3202 RNA5SP2792 RNA5SP1212 RNA5SP2072 RNA5SP1512 RNA5SP3972 RNA5SP2862 RNA5SP3292
- RNA5SP3052 RNA5SP1952 RNA5SP3452 RNA5S142 RNA5SP2542 RNA5SP2352 RNA5SP362 RNA5SP3722
- RNA5SP492 RNA5S62 RNA5SP292 RNA5SP552 RNA5SP2452 RNA5SP3442 RNA5SP2222 RNA5SP2162
- RNA5SP622 RNA5SP462 RNA5SP752 RNA5SP3522 RNA5SP4732 RNA5SP4632 RNA5SP3692 RNA5SP3402
- RNA5SP822 RNA5SP1932 RNA5SP3352 RNA5SP4702 RNA5SP3552 RNA5SP1072 RNA5SP2962 RNA5SP3232
- RNA5SP4912 RNA5S42 RNA5SP2882 RNA5SP2822 RNA5SP972 RNA5SP3072 RNA5SP3922 RNA5SP4452
- RNA5SP1202 RNA5SP2782 RNA5SP4272 RNA5SP1272 RNA5SP1642 RNA5SP1962 RNA5SP3962 RNA5SP1752
- RNA5SP5182 RNA5SP3852 RNA5SP2532 RNA5SP682 RNA5SP3752 RNA5SP3062 RNA5SP2702 RNA5SP5222
- RNA5S72 RNA5SP4962 RNA5SP3212 RNA5SP2642 RNA5SP4742 RNA5SP2852 RNA5SP592 RNA5SP742
- RNA5SP2052 RNA5SP1552 RNA5SP352 RNA5SP2772 RNA5SP5212 RNA5SP2202 RNA5SP4522 RNA5SP4622
- RNA5SP1002 RNA5SP1472 RNA5SP2992 RNA5SP3362 RNA5SP532 RNA5SP862 RNA5SP732 RNA5SP4442
- RNA5S22 RNA5SP1652 RNA5SP4592 RNA5SP4832 RNA5SP4892 RNA5SP5152 RNA5SP2082 RNA5SP4342
- RNA5S82 RNA5SP4252 RNA5SP5192 RNA5SP1722 RNA5SP432 RNA5SP2902 RNA5SP3902 RNA5SP472
- RNA5SP4842 RNA5SP322 RNA5SP1372 RNA5SP1162 RNA5SP3802 RNA5SP4402 RNA5SP4572 RNA5SP5082
- RNA5SP4242 RNA5SP4202 RNA5SP1612 RNA5SP272 RNA5SP1852 RNA5SP4362 RNA5SP2382 RNA5SP2912
- RNA5SP3952 RNA5SP3042 RNA5SP4092 RNA5SP4182 RNA5SP3312 RNA5SP2572 RNA5SP3502 RNA5SP4882
- RNA5SP4992 RNA5SP572 RNA5SP912 RNA5SP182 RNA5SP3192 RNA5SP3432 RNA5SP1262 RNA5SP4692
- RNA5SP3602 RNA5SP1332 RNA5SP4002 RNA5SP2432 RNA5SP392 RNA5SP1532 RNA5SP1782 RNA5SP3562
- RNA5SP3632 RNA5SP452 RNA5SP2132 RNA5SP2312 RNA5SP5162 RNA5SP3412 RNA5SP992 RNA5SP4752
- ENSG000002386022 RNA5SP3702 RNA5S122 RNA5SP3222 RNA5SP5062 RNA5SP522 RNA5SP3532 RNA5SP3002
- RNA5SP4792 RNA5SP3262 RNA5SP2372 RNA5SP2872 RNA5SP1172 RNA5SP2732 RNA5SP722 RNA5S92
- RNA5SP2092 RNA5SP5142 RNA5SP1712 RNA5SP872 RNA5SP1092 RNA5SP4432 RNA5SP842 RNA5SP3492
- RNA5SP342 RNA5SP1942 RNA5SP3322 RNA5SP1342 RNA5SP3032 RNA5SP1562 RNA5SP2362 RNA5SP4502
- RNA5SP5072 RNA5SP1322 RNA5SP2982 RNA5SP4982 RNA5SP5052 RNA5SP2802 RNA5SP2682 RNA5SP442
- RNA5SP632 RNA5SP2722 RNA5SP3112 RNA5SP4822 RNA5SP332 RNA5SP1102 RNA5SP902 RNA5SP242
- RNA5SP3862 RNA5SP2062 RNA5SP1462 RNA5SP1292 RNA5SP4052 RNA5SP3612 RNA5SP4492 RNA5SP1622
- RNA5SP5232 RNA5SP4172 RNA5SP1662 RNA5SP3942 RNA5SP1862 RNA5SP1482 RNA5SP2442 RNA5SP1542
- RNA5SP2562 RNA5SP3372 RNA5SP542 RNA5SP2302 RNA5SP1772 ENSG000002387622
RNA5SP96 for paralogs About GeneDecksing
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Genomic Variants
for RNA5SP96 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
| | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for RNA5SP96 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for RNA5SP96 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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External Searches for RNA5SP96 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing RNA5SP96 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
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Other Databases showing RNA5SP96 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing RNA5SP96 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
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About This Section
| Patent Information for RNA5SP96 gene:
Search GeneIP for patents involving RNA5SP96
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Products
for RNA5SP96 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RNA5SP96 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RNA5SP96 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RNA5SP96 | | | Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RNA5SP96 | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RNA5SP96 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RNA5SP96 |
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 | | | | |  |  |  | | | | Search ThermoFisher Antibodies for RNA5SP96 |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat RNA5SP96 |
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