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Aliases for RNA5SP88 Gene

Subcategory (RNA class) for RNA5SP88 Gene


Aliases for RNA5SP88 Gene

  • RNA, 5S Ribosomal Pseudogene 88 2 3 5
  • RNA, 5S Ribosomal 88 2 3
  • RN5S88 3

External Ids for RNA5SP88 Gene

ORGUL Members for RNA5SP88 Gene

Previous HGNC Symbols for RNA5SP88 Gene

  • RN5S88

Previous GeneCards Identifiers for RNA5SP88 Gene

  • GC02M024789

Summaries for RNA5SP88 Gene

GeneCards Summary for RNA5SP88 Gene

RNA5SP88 (RNA, 5S Ribosomal Pseudogene 88) is a Pseudogene, and is affiliated with the rRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP88 Gene

Genomics for RNA5SP88 Gene

Regulatory Elements for RNA5SP88 Gene

Enhancers for RNA5SP88 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G024577 0.9 ENCODE 0.4 -13.0 -12989 0.2 HDAC1 PKNOX1 TBL1XR1 BMI1 TCF12 CBX5 RELB IKZF2 CREM JUNB NCOA1 ADCY3 RNA5SP88 GC02M024565 RNU6-936P
GH02G024586 0.9 ENCODE 0.3 -24.0 -24019 4.7 HDGF YBX3 FOXA2 CBX3 TBL1XR1 ZSCAN4 WRNIP1 ZBTB40 TCF12 CBX5 NCOA1 PTRHD1 ADCY3 GC02M024565 RNA5SP88 RNU6-936P
GH02G024612 1 Ensembl ENCODE 0.2 -48.6 -48631 1.4 CTCF ETV1 ZNF384 RAD21 FOXK2 ZNF143 SMC3 FOS ZNF362 ZNF654 NCOA1 RNU6-936P RNA5SP88 GC02M024565
GH02G024620 0.6 ENCODE 0.2 -56.6 -56648 1.3 ZNF263 ZNF362 ATF1 GABPB1 IKZF1 KDM1A CREM EP300 NCOA1 RNU6-936P ADCY3 PTRHD1 CENPO RNA5SP88 GC02M024565
GH02G024652 0.6 Ensembl 0.2 -88.3 -88263 0.4 ZNF121 ARID3A CEBPB FOXP2 CEBPG ZNF423 FOXA1 PTRHD1 RNU6-936P GC02M024565 RNA5SP88
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP88 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP88 Gene

24,564,630 bp from pter
24,564,738 bp from pter
109 bases
Minus strand

Genomic View for RNA5SP88 Gene

Genes around RNA5SP88 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP88 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP88 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP88 Gene

Proteins for RNA5SP88 Gene

Post-translational modifications for RNA5SP88 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP88 Gene

Domains & Families for RNA5SP88 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP88 Gene

Function for RNA5SP88 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP88 Gene

Localization for RNA5SP88 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP88 Gene

Pathways & Interactions for RNA5SP88 Gene

SuperPathways for RNA5SP88 Gene

No Data Available

Interacting Proteins for RNA5SP88 Gene

Gene Ontology (GO) - Biological Process for RNA5SP88 Gene


No data available for Pathways by source and SIGNOR curated interactions for RNA5SP88 Gene

Drugs & Compounds for RNA5SP88 Gene

No Compound Related Data Available

Transcripts for RNA5SP88 Gene

mRNA/cDNA for RNA5SP88 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP88 Gene

No ASD Table

Relevant External Links for RNA5SP88 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNA5SP88 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP88 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP88 Gene:

genes like me logo Genes that share expression patterns with RNA5SP88: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP88 Gene

Orthologs for RNA5SP88 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP88 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 100 (a)
(Mus musculus)
Mammalia n-R5s67 35
  • 75 (a)
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 74 (a)
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 35
  • 72 (a)
(Monodelphis domestica)
Mammalia 5S_rRNA 35
  • 68 (a)
(Canis familiaris)
Mammalia 5S_rRNA 35
  • 62 (a)
(Gallus gallus)
Aves 5S_rRNA 35
  • 65 (a)
(Anolis carolinensis)
Reptilia 5S_rRNA 35
  • 65 (a)
Species where no ortholog for RNA5SP88 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP88 Gene

Gene Tree for RNA5SP88 (if available)
Gene Tree for RNA5SP88 (if available)

Paralogs for RNA5SP88 Gene

No data available for Paralogs for RNA5SP88 Gene

Variants for RNA5SP88 Gene

Relevant External Links for RNA5SP88 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP88 Gene

Disorders for RNA5SP88 Gene

No disorders were found for RNA5SP88 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP88 Gene

Publications for RNA5SP88 Gene

No publications were found for RNA5SP88 Gene.

Products for RNA5SP88 Gene

Sources for RNA5SP88 Gene

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