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Aliases for RNA5SP74 Gene

Subcategory (RNA class) for RNA5SP74 Gene

rRNA

Aliases for RNA5SP74 Gene

  • RNA, 5S Ribosomal Pseudogene 74 2 3 5
  • RNA, 5S Ribosomal 74 2 3
  • RN5S74 3

External Ids for RNA5SP74 Gene

ORGUL Members for RNA5SP74 Gene

Previous HGNC Symbols for RNA5SP74 Gene

  • RN5S74

Summaries for RNA5SP74 Gene

GeneCards Summary for RNA5SP74 Gene

RNA5SP74 (RNA, 5S Ribosomal Pseudogene 74) is a Pseudogene, and is affiliated with the rRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP74 Gene

Genomics for RNA5SP74 Gene

Regulatory Elements for RNA5SP74 Gene

Enhancers for RNA5SP74 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F204562 1.6 FANTOM5 Ensembl ENCODE 0.8 -2.2 -2205 5.3 HDGF ATF1 PKNOX1 ARNT CREB3L1 SIN3A ELK1 GATA2 FOS KLF13 MDM4 GYG2P2 ZBED6 PPP1R15B SNRPE ENSG00000240710 RBBP5 LRRN2 NFASC PIK3C2B
GH01F204561 0.7 ENCODE 0.8 +0.7 654 0.2 RFX1 PKNOX1 MTA2 MNT DPF2 BMI1 TBX21 GATA3 POLR2A IKZF1 ENSG00000240710 LRRN2 NFASC MDM4 GC01M204562 RNA5SP74 PIR53964
GH01F204560 0.7 ENCODE 0.8 +1.9 1902 0.6 CTCF JUN ZIC2 ZNF2 ATF2 JUND GLIS2 ZNF366 SCRT2 ZNF600 ENSG00000240710 LRRN2 NFASC GC01M204562 RNA5SP74 PIR53964
GH01F204578 1 Ensembl ENCODE 0.3 -16.6 -16562 2.1 HDGF CTCF MXI1 EBF1 SCRT2 EED ETV6 CHD2 MAZ MTA2 LRRN2 ENSG00000240710 LOC105371691 MDM4 LOC105371692 RNA5SP74 GC01M204562
GH01F204591 1 Ensembl ENCODE 0.3 -29.5 -29473 1.2 PKNOX1 JUN SIN3A CTBP1 GATA3 ZNF366 POLR2A ZNF600 FOSL2 FOS MDM4 LOC105371692 RNA5SP74 GC01M204562
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP74 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP74 Gene

Chromosome:
1
Start:
204,562,413 bp from pter
End:
204,562,521 bp from pter
Size:
109 bases
Orientation:
Minus strand

Genomic View for RNA5SP74 Gene

Genes around RNA5SP74 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP74 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP74 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP74 Gene

Proteins for RNA5SP74 Gene

Post-translational modifications for RNA5SP74 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP74 Gene

Domains & Families for RNA5SP74 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP74 Gene

Function for RNA5SP74 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP74 Gene

Localization for RNA5SP74 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP74 Gene

Pathways & Interactions for RNA5SP74 Gene

SuperPathways for RNA5SP74 Gene

No Data Available

Interacting Proteins for RNA5SP74 Gene

Gene Ontology (GO) - Biological Process for RNA5SP74 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP74 Gene

Transcripts for RNA5SP74 Gene

mRNA/cDNA for RNA5SP74 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP74 Gene

No ASD Table

Relevant External Links for RNA5SP74 Gene

GeneLoc Exon Structure for
RNA5SP74
ECgene alternative splicing isoforms for
RNA5SP74

Expression for RNA5SP74 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP74 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP74 Gene:

RNA5SP74
genes like me logo Genes that share expression patterns with RNA5SP74: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNA5SP74 Gene

Orthologs for RNA5SP74 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP74 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 5S_rRNA 35
  • 88 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 35
  • 88 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia n-R5s194 35
  • 87 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 35
  • 85 (a)
OneToMany
cow
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 82 (a)
OneToOne
Species where no ortholog for RNA5SP74 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP74 Gene

ENSEMBL:
Gene Tree for RNA5SP74 (if available)
TreeFam:
Gene Tree for RNA5SP74 (if available)

Paralogs for RNA5SP74 Gene

No data available for Paralogs for RNA5SP74 Gene

Variants for RNA5SP74 Gene

Relevant External Links for RNA5SP74 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP74

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP74 Gene

Disorders for RNA5SP74 Gene

No disorders were found for RNA5SP74 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP74 Gene

Publications for RNA5SP74 Gene

No publications were found for RNA5SP74 Gene.

Products for RNA5SP74 Gene

Sources for RNA5SP74 Gene

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