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Aliases for RNA5SP52 Gene

Subcategory (RNA class) for RNA5SP52 Gene

rRNA

Aliases for RNA5SP52 Gene

  • RNA, 5S Ribosomal Pseudogene 52 2 3 5
  • RNA, 5S Ribosomal 52 2 3
  • RN5S52 3

External Ids for RNA5SP52 Gene

ORGUL Members for RNA5SP52 Gene

Previous HGNC Symbols for RNA5SP52 Gene

  • RN5S52

Previous GeneCards Identifiers for RNA5SP52 Gene

  • GC01M087920

Summaries for RNA5SP52 Gene

GeneCards Summary for RNA5SP52 Gene

RNA5SP52 (RNA, 5S Ribosomal Pseudogene 52) is a Pseudogene, and is affiliated with the rRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP52 Gene

Genomics for RNA5SP52 Gene

Regulatory Elements for RNA5SP52 Gene

Enhancers for RNA5SP52 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F087449 1.2 FANTOM5 Ensembl ENCODE 0.8 +3.5 3541 1.3 HDGF PKNOX1 TBL1XR1 BMI1 RAD21 ZBTB40 EGR1 CBX5 ELK1 ETV6 GC01M087454 LOC105378834 RNA5SP52
GH01F087450 1.1 Ensembl ENCODE 0.8 +2.4 2399 0.5 CTCF REST RAD21 ZBTB40 GABPA JUND GATA3 PRDM10 CREM NR2C2 GC01M087454 LOC105378834 RNA5SP52
GH01F087451 0.5 Ensembl 0.8 +1.7 1673 0.2 ZNF133 JUNB GC01M087454 RNA5SP52 LOC105378834
GH01F087472 0.6 ENCODE 0.3 -19.6 -19563 1.3 YY2 JUN JUND GATA3 ATF3 GATA2 FOS WT1 ZBTB20 ZXDB GC01M087454 RNA5SP52 GC01P087505
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNA5SP52 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP52 Gene

Chromosome:
1
Start:
87,453,240 bp from pter
End:
87,453,373 bp from pter
Size:
134 bases
Orientation:
Minus strand

Genomic View for RNA5SP52 Gene

Genes around RNA5SP52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP52 Gene

Proteins for RNA5SP52 Gene

Post-translational modifications for RNA5SP52 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP52 Gene

Domains & Families for RNA5SP52 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP52 Gene

Function for RNA5SP52 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP52 Gene

Localization for RNA5SP52 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP52 Gene

Pathways & Interactions for RNA5SP52 Gene

SuperPathways for RNA5SP52 Gene

No Data Available

Interacting Proteins for RNA5SP52 Gene

Gene Ontology (GO) - Biological Process for RNA5SP52 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP52 Gene

Transcripts for RNA5SP52 Gene

mRNA/cDNA for RNA5SP52 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP52 Gene

No ASD Table

Relevant External Links for RNA5SP52 Gene

GeneLoc Exon Structure for
RNA5SP52
ECgene alternative splicing isoforms for
RNA5SP52

Expression for RNA5SP52 Gene

mRNA expression in normal human tissues for RNA5SP52 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP52 Gene:

RNA5SP52
genes like me logo Genes that share expression patterns with RNA5SP52: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNA5SP52 Gene

Orthologs for RNA5SP52 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP52 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35 35
  • 93 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 35
  • 73 (a)
OneToMany
dog
(Canis familiaris)
Mammalia 5S_rRNA 35
  • 71 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 66 (a)
OneToOne
Species where no ortholog for RNA5SP52 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP52 Gene

ENSEMBL:
Gene Tree for RNA5SP52 (if available)
TreeFam:
Gene Tree for RNA5SP52 (if available)

Paralogs for RNA5SP52 Gene

No data available for Paralogs for RNA5SP52 Gene

Variants for RNA5SP52 Gene

Relevant External Links for RNA5SP52 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP52 Gene

Disorders for RNA5SP52 Gene

No disorders were found for RNA5SP52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP52 Gene

Publications for RNA5SP52 Gene

No publications were found for RNA5SP52 Gene.

Products for RNA5SP52 Gene

Sources for RNA5SP52 Gene

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