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Aliases for RNA5SP515 Gene

Subcategory (RNA class) for RNA5SP515 Gene


Aliases for RNA5SP515 Gene

  • RNA, 5S Ribosomal Pseudogene 515 2 3 5
  • RNA, 5S Ribosomal 515 2 3
  • RN5S515 3

External Ids for RNA5SP515 Gene

ORGUL Members for RNA5SP515 Gene

Previous HGNC Symbols for RNA5SP515 Gene

  • RN5S515

Previous GeneCards Identifiers for RNA5SP515 Gene

  • GC0XM134564

Summaries for RNA5SP515 Gene

GeneCards Summary for RNA5SP515 Gene

RNA5SP515 (RNA, 5S Ribosomal Pseudogene 515) is a Pseudogene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for RNA5SP515 Gene

  • 5S ribosomal RNA: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

Additional gene information for RNA5SP515 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNA5SP515 Gene

Genomics for RNA5SP515 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP515 Gene

Promoters and enhancers for RNA5SP515 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI135389 Enhancer 0.8 ENCODE 14 +38.4 38354 0.2 ZBTB21 JUN CEBPG ZNF644 ETS1 ZNF366 SCRT2 HNF4G PRDM10 ATF7 SMIM10L2A RNA5SP515 LOC100506790 PIR39715
GH0XI135421 Promoter/Enhancer 1.3 Ensembl ENCODE 0.4 +6.2 6184 1.4 PKNOX1 RB1 ZNF335 EGR1 SCRT2 KLF7 EGR2 SP3 ZNF398 SP1 SMIM10L2A ZNF75D ZNF449 GC0XM135429 RNA5SP515
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNA5SP515 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP515 Gene

Genomic Locations for RNA5SP515 Gene
118 bases
Minus strand

Genomic View for RNA5SP515 Gene

Genes around RNA5SP515 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP515 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP515 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP515 Gene

Proteins for RNA5SP515 Gene

Post-translational modifications for RNA5SP515 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP515 Gene

Domains & Families for RNA5SP515 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP515 Gene

Function for RNA5SP515 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP515 Gene

Localization for RNA5SP515 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP515 Gene

Pathways & Interactions for RNA5SP515 Gene

SuperPathways for RNA5SP515 Gene

No Data Available

Interacting Proteins for RNA5SP515 Gene

Gene Ontology (GO) - Biological Process for RNA5SP515 Gene


No data available for Pathways by source and SIGNOR curated interactions for RNA5SP515 Gene

Drugs & Compounds for RNA5SP515 Gene

No Compound Related Data Available

Transcripts for RNA5SP515 Gene

mRNA/cDNA for RNA5SP515 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP515 Gene

No ASD Table

Relevant External Links for RNA5SP515 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNA5SP515 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP515 Gene

mRNA differential expression in normal tissues according to GTEx for RNA5SP515 Gene

This gene is overexpressed in Brain - Caudate (basal ganglia) (x5.8), Brain - Nucleus accumbens (basal ganglia) (x5.4), and Brain - Putamen (basal ganglia) (x4.9).

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP515 Gene:

genes like me logo Genes that share expression patterns with RNA5SP515: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP515 Gene

Orthologs for RNA5SP515 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP515 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia 5S_rRNA 34
  • 98 (a)
(Monodelphis domestica)
Mammalia 5S_rRNA 34
  • 74 (a)
(Anolis carolinensis)
Reptilia 5S_rRNA 34
  • 76 (a)
Species where no ortholog for RNA5SP515 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP515 Gene

Gene Tree for RNA5SP515 (if available)
Gene Tree for RNA5SP515 (if available)

Paralogs for RNA5SP515 Gene

No data available for Paralogs for RNA5SP515 Gene

Variants for RNA5SP515 Gene

Additional Variant Information for RNA5SP515 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP515 Gene

Disorders for RNA5SP515 Gene

No disorders were found for RNA5SP515 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP515 Gene

Publications for RNA5SP515 Gene

No publications were found for RNA5SP515 Gene.

Products for RNA5SP515 Gene

Sources for RNA5SP515 Gene

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