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Aliases for RNA5SP509 Gene

Subcategory (RNA class) for RNA5SP509 Gene


Aliases for RNA5SP509 Gene

  • RNA, 5S Ribosomal Pseudogene 509 2 3 5
  • RNA, 5S Ribosomal 509 2 3
  • RN5S509 3

External Ids for RNA5SP509 Gene

ORGUL Members for RNA5SP509 Gene

Previous HGNC Symbols for RNA5SP509 Gene

  • RN5S509

Previous GeneCards Identifiers for RNA5SP509 Gene

  • GC0XP076288

Summaries for RNA5SP509 Gene

GeneCards Summary for RNA5SP509 Gene

RNA5SP509 (RNA, 5S Ribosomal Pseudogene 509) is a Pseudogene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for RNA5SP509 Gene

  • 5S ribosomal RNA: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNA5SP509 Gene

Genomics for RNA5SP509 Gene

Regulatory Elements for RNA5SP509 Gene

Enhancers for RNA5SP509 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF077070 0.6 Ensembl 0.8 +3.7 3692 0.4 PRDM1 LOC105373254 RNA5SP509
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNA5SP509 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP509 Gene

77,066,709 bp from pter
77,066,827 bp from pter
119 bases
Plus strand

Genomic View for RNA5SP509 Gene

Genes around RNA5SP509 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP509 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP509 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP509 Gene

Proteins for RNA5SP509 Gene

Post-translational modifications for RNA5SP509 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP509 Gene

Domains & Families for RNA5SP509 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP509 Gene

Function for RNA5SP509 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP509 Gene

Localization for RNA5SP509 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP509 Gene

Pathways & Interactions for RNA5SP509 Gene

SuperPathways for RNA5SP509 Gene

No Data Available

Interacting Proteins for RNA5SP509 Gene

Gene Ontology (GO) - Biological Process for RNA5SP509 Gene


No data available for Pathways by source and SIGNOR curated interactions for RNA5SP509 Gene

Transcripts for RNA5SP509 Gene

mRNA/cDNA for RNA5SP509 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP509 Gene

No ASD Table

Relevant External Links for RNA5SP509 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNA5SP509 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP509 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP509 Gene:

genes like me logo Genes that share expression patterns with RNA5SP509: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNA5SP509 Gene

Orthologs for RNA5SP509 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP509 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 98 (a)
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 77 (a)
(Monodelphis domestica)
Mammalia 5S_rRNA 35
  • 74 (a)
(Mus musculus)
Mammalia Gm24509 35
  • 72 (a)
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 35
  • 72 (a)
Species where no ortholog for RNA5SP509 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP509 Gene

Gene Tree for RNA5SP509 (if available)
Gene Tree for RNA5SP509 (if available)

Paralogs for RNA5SP509 Gene

No data available for Paralogs for RNA5SP509 Gene

Variants for RNA5SP509 Gene

Relevant External Links for RNA5SP509 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP509 Gene

Disorders for RNA5SP509 Gene

No disorders were found for RNA5SP509 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP509 Gene

Publications for RNA5SP509 Gene

No publications were found for RNA5SP509 Gene.

Products for RNA5SP509 Gene

Sources for RNA5SP509 Gene

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