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Aliases for RNA5SP502 Gene

Subcategory (RNA class) for RNA5SP502 Gene

rRNA

Aliases for RNA5SP502 Gene

  • RNA, 5S Ribosomal Pseudogene 502 2 3 5
  • RNA, 5S Ribosomal 502 2 3
  • RN5S502 3

External Ids for RNA5SP502 Gene

ORGUL Members for RNA5SP502 Gene

Previous HGNC Symbols for RNA5SP502 Gene

  • RN5S502

Previous GeneCards Identifiers for RNA5SP502 Gene

  • GC0XP041154

Summaries for RNA5SP502 Gene

GeneCards Summary for RNA5SP502 Gene

RNA5SP502 (RNA, 5S Ribosomal Pseudogene 502) is a Pseudogene, and is affiliated with the rRNA class.

Additional gene information for RNA5SP502 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP502 Gene

Genomics for RNA5SP502 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP502 Gene

Promoters and enhancers for RNA5SP502 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI041293 Enhancer 0.4 ENCODE 550.8 +0.7 665 0.2 CTCF RAD21 GC0XP041293 RNA5SP502 GC0XM041302
GH0XI041290 Enhancer 0.3 ENCODE 550.8 -1.4 -1394 2.1 EZH2 GC0XP041293 RNA5SP502 LOC105373184
GH0XI041299 Enhancer 1 Ensembl ENCODE 0.4 +8.6 8608 2.8 MAX BACH1 EBF1 ZBTB40 FOSL1 ZNF121 ZNF316 ZBTB48 PATZ1 PRDM10 GC0XM041302 DDX3X RNA5SP502
GH0XI041303 Enhancer 0.5 ENCODE 0.4 +10.4 10421 0.1 MAFF ZNF316 MAFG MAFK EMSY RFX5 GC0XM041302 RNA5SP502
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNA5SP502 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP502 Gene

Genomic Locations for RNA5SP502 Gene
chrX:41,292,798-41,292,916
(GRCh38/hg38)
Size:
119 bases
Orientation:
Plus strand
chrX:41,152,051-41,152,169
(GRCh37/hg19)

Genomic View for RNA5SP502 Gene

Genes around RNA5SP502 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP502 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP502 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP502 Gene

Proteins for RNA5SP502 Gene

Post-translational modifications for RNA5SP502 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP502 Gene

Domains & Families for RNA5SP502 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP502 Gene

Function for RNA5SP502 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP502 Gene

Localization for RNA5SP502 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP502 Gene

Pathways & Interactions for RNA5SP502 Gene

SuperPathways for RNA5SP502 Gene

No Data Available

Interacting Proteins for RNA5SP502 Gene

Gene Ontology (GO) - Biological Process for RNA5SP502 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP502 Gene

Drugs & Compounds for RNA5SP502 Gene

No Compound Related Data Available

Transcripts for RNA5SP502 Gene

mRNA/cDNA for RNA5SP502 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP502 Gene

No ASD Table

Relevant External Links for RNA5SP502 Gene

GeneLoc Exon Structure for
RNA5SP502
ECgene alternative splicing isoforms for
RNA5SP502

Expression for RNA5SP502 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP502 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP502 Gene:

RNA5SP502
genes like me logo Genes that share expression patterns with RNA5SP502: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP502 Gene

Orthologs for RNA5SP502 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP502 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 5S_rRNA 34
  • 77 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 34
  • 63 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 34
  • 57 (a)
OneToMany
Species where no ortholog for RNA5SP502 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP502 Gene

ENSEMBL:
Gene Tree for RNA5SP502 (if available)
TreeFam:
Gene Tree for RNA5SP502 (if available)

Paralogs for RNA5SP502 Gene

No data available for Paralogs for RNA5SP502 Gene

Variants for RNA5SP502 Gene

Additional Variant Information for RNA5SP502 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP502

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP502 Gene

Disorders for RNA5SP502 Gene

No disorders were found for RNA5SP502 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP502 Gene

Publications for RNA5SP502 Gene

No publications were found for RNA5SP502 Gene.

Products for RNA5SP502 Gene

Sources for RNA5SP502 Gene

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