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Aliases for RNA5SP479 Gene

Subcategory (RNA class) for RNA5SP479 Gene

rRNA

Aliases for RNA5SP479 Gene

  • RNA, 5S Ribosomal Pseudogene 479 2 3 5
  • RNA, 5S Ribosomal 479 2 3
  • RN5S479 3

External Ids for RNA5SP479 Gene

ORGUL Members for RNA5SP479 Gene

Previous HGNC Symbols for RNA5SP479 Gene

  • RN5S479

Previous GeneCards Identifiers for RNA5SP479 Gene

  • GC20M023363

Summaries for RNA5SP479 Gene

GeneCards Summary for RNA5SP479 Gene

RNA5SP479 (RNA, 5S Ribosomal Pseudogene 479) is a Pseudogene, and is affiliated with the rRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP479 Gene

Genomics for RNA5SP479 Gene

Regulatory Elements for RNA5SP479 Gene

Enhancers for RNA5SP479 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F023380 0.6 FANTOM5 0.8 +0.6 612 0.2 ESRRA CHD1 HMBOX1 ZNF24 SSTR4 NAPB GC20M023381 RNA5SP479 GZF1
GH20F023386 0.5 ENCODE 0.4 -5.8 -5819 1.0 ELF3 ARID4B ZSCAN9 RARA CREM MIXL1 THAP11 PAF1 HMG20B MXD4 NAPB CSTL1 RNA5SP479 GC20M023381
GH20F023365 1.4 FANTOM5 Ensembl ENCODE 0.4 +14.5 14456 1.5 HDAC1 ATF1 TAL1 JUN ZNF7 ZNF316 POLR2A MAFK PAF1 SMARCE1 NAPB CSTL1 CD93 GZF1 THBD RNA5SP479 GC20M023381
GH20F023391 0.4 ENCODE 0.4 -10.9 -10897 0.2 CSTL1 RNA5SP479 GC20M023381 NAPB
GH20F023367 0.6 ENCODE 0.4 +13.0 13034 0.2 SP7 GZF1 RNA5SP479 GC20M023381
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNA5SP479 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP479 Gene

Chromosome:
20
Start:
23,380,896 bp from pter
End:
23,381,012 bp from pter
Size:
117 bases
Orientation:
Minus strand

Genomic View for RNA5SP479 Gene

Genes around RNA5SP479 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP479 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP479 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP479 Gene

Proteins for RNA5SP479 Gene

Post-translational modifications for RNA5SP479 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP479 Gene

Domains & Families for RNA5SP479 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP479 Gene

Function for RNA5SP479 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP479 Gene

Localization for RNA5SP479 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP479 Gene

Pathways & Interactions for RNA5SP479 Gene

SuperPathways for RNA5SP479 Gene

No Data Available

Interacting Proteins for RNA5SP479 Gene

Gene Ontology (GO) - Biological Process for RNA5SP479 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP479 Gene

Transcripts for RNA5SP479 Gene

mRNA/cDNA for RNA5SP479 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP479 Gene

No ASD Table

Relevant External Links for RNA5SP479 Gene

GeneLoc Exon Structure for
RNA5SP479
ECgene alternative splicing isoforms for
RNA5SP479

Expression for RNA5SP479 Gene

mRNA expression in normal human tissues for RNA5SP479 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP479 Gene:

RNA5SP479
genes like me logo Genes that share expression patterns with RNA5SP479: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNA5SP479 Gene

Orthologs for RNA5SP479 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP479 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 5S_rRNA 35
  • 82 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 80 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 35
  • 74 (a)
OneToOne
mouse
(Mus musculus)
Mammalia n-R5s52 35
  • 73 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 35
  • 70 (a)
ManyToMany
Species where no ortholog for RNA5SP479 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP479 Gene

ENSEMBL:
Gene Tree for RNA5SP479 (if available)
TreeFam:
Gene Tree for RNA5SP479 (if available)

Paralogs for RNA5SP479 Gene

No data available for Paralogs for RNA5SP479 Gene

Variants for RNA5SP479 Gene

Relevant External Links for RNA5SP479 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP479

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP479 Gene

Disorders for RNA5SP479 Gene

No disorders were found for RNA5SP479 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP479 Gene

Publications for RNA5SP479 Gene

No publications were found for RNA5SP479 Gene.

Products for RNA5SP479 Gene

Sources for RNA5SP479 Gene

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