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Aliases for RNA5SP476 Gene

Aliases for RNA5SP476 Gene

  • RNA, 5S Ribosomal Pseudogene 476 2 3 5
  • RNA, 5S Ribosomal 476 2 3
  • RN5S476 3

External Ids for RNA5SP476 Gene

Previous HGNC Symbols for RNA5SP476 Gene

  • RN5S476

Summaries for RNA5SP476 Gene

GeneCards Summary for RNA5SP476 Gene

RNA5SP476 (RNA, 5S Ribosomal Pseudogene 476) is a Pseudogene.

Additional gene information for RNA5SP476 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP476 Gene

Genomics for RNA5SP476 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP476 Gene

Promoters and enhancers for RNA5SP476 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I018428 Enhancer 0.8 ENCODE 0.8 -4.9 -4870 0.2 FOXA2 MZF1 FEZF1 RAD21 YY1 ZNF366 ZSCAN5C KLF7 ZNF680 YY2 DZANK1 POLR3F RBBP9 RNA5SP476 GCNT1P1
GH20I018465 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.3 +33.2 33240 3 PKNOX1 CLOCK ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 DZANK1 POLR3F GCNT1P1 LINC00652 DTD1 RNA5SP476
GH20I018430 Enhancer 0.7 ENCODE 0.8 -3.5 -3520 0.2 PKNOX1 MZF1 FEZF1 HIC1 ZNF366 ZNF239 SCRT2 ZSCAN5C KLF7 KLF8 DZANK1 POLR3F RNA5SP476 GCNT1P1
GH20I018436 Enhancer 0.6 Ensembl 0.8 +3.0 2959 0.4 ZNF282 NFRKB ZNF384 ZNF316 SCRT2 IKZF1 PRDM10 HOMEZ DZANK1 POLR3F SMIM26 RNA5SP476
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNA5SP476 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP476 Gene

Genomic Locations for RNA5SP476 Gene
chr20:18,433,842-18,433,944
(GRCh38/hg38)
Size:
103 bases
Orientation:
Plus strand
chr20:18,414,486-18,414,588
(GRCh37/hg19)

Genomic View for RNA5SP476 Gene

Genes around RNA5SP476 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP476 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP476 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP476 Gene

Proteins for RNA5SP476 Gene

Post-translational modifications for RNA5SP476 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP476 Gene

Domains & Families for RNA5SP476 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP476 Gene

Function for RNA5SP476 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP476 Gene

Localization for RNA5SP476 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP476 Gene

Pathways & Interactions for RNA5SP476 Gene

SuperPathways for RNA5SP476 Gene

No Data Available

Interacting Proteins for RNA5SP476 Gene

Gene Ontology (GO) - Biological Process for RNA5SP476 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP476 Gene

Drugs & Compounds for RNA5SP476 Gene

No Compound Related Data Available

Transcripts for RNA5SP476 Gene

mRNA/cDNA for RNA5SP476 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP476 Gene

No ASD Table

Relevant External Links for RNA5SP476 Gene

GeneLoc Exon Structure for
RNA5SP476
ECgene alternative splicing isoforms for
RNA5SP476

Expression for RNA5SP476 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP476 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP476 Gene:

RNA5SP476
genes like me logo Genes that share expression patterns with RNA5SP476: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP476 Gene

Orthologs for RNA5SP476 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP476 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 34
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 34
  • 69 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 5S_rRNA 34
  • 56 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia n-R5s72 34
  • 55 (a)
ManyToMany
Species where no ortholog for RNA5SP476 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP476 Gene

ENSEMBL:
Gene Tree for RNA5SP476 (if available)
TreeFam:
Gene Tree for RNA5SP476 (if available)

Paralogs for RNA5SP476 Gene

No data available for Paralogs for RNA5SP476 Gene

Variants for RNA5SP476 Gene

Additional Variant Information for RNA5SP476 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP476

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP476 Gene

Disorders for RNA5SP476 Gene

No disorders were found for RNA5SP476 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP476 Gene

Publications for RNA5SP476 Gene

No publications were found for RNA5SP476 Gene.

Products for RNA5SP476 Gene

Sources for RNA5SP476 Gene

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