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Aliases for RNA5SP469 Gene

Subcategory (RNA class) for RNA5SP469 Gene

rRNA

Aliases for RNA5SP469 Gene

  • RNA, 5S Ribosomal Pseudogene 469 2 3 5
  • RNA, 5S Ribosomal 469 2 3
  • RN5S469 3

External Ids for RNA5SP469 Gene

ORGUL Members for RNA5SP469 Gene

Previous HGNC Symbols for RNA5SP469 Gene

  • RN5S469

Previous GeneCards Identifiers for RNA5SP469 Gene

  • GC19M021297

Summaries for RNA5SP469 Gene

GeneCards Summary for RNA5SP469 Gene

RNA5SP469 (RNA, 5S Ribosomal Pseudogene 469) is a Pseudogene, and is affiliated with the rRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP469 Gene

Genomics for RNA5SP469 Gene

Regulatory Elements for RNA5SP469 Gene

Enhancers for RNA5SP469 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F021081 1 ENCODE 0.3 +30.8 30770 1.9 ATF1 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF48 ZNF2 YY1 FOS ZNF714 ZNF431 RNA5SP469 GC19M021543
GH19F021084 0.8 Ensembl ENCODE 0.3 +28.9 28850 1.3 ZFHX2 MYNN ZNF512 FOS KDM1A ZNF714 RNA5SP469 GC19M021543
GH19F021091 0.4 ENCODE 0.3 +21.3 21250 1.8 TEAD1 TEAD3 ZNF431 ZNF429 ZNF714 RNA5SP469 GC19M021543
GH19F021100 0.2 ENCODE 0.4 +11.7 11712 1.2 ZNF714 LOC105372321 ZNF493 GC19M021543 RNA5SP469
GH19F021083 0.2 ENCODE 0.3 +29.6 29628 0.0 ZNF714 RNA5SP469 GC19M021543
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP469 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP469 Gene

Chromosome:
19
Start:
21,113,128 bp from pter
End:
21,113,236 bp from pter
Size:
109 bases
Orientation:
Minus strand

Genomic View for RNA5SP469 Gene

Genes around RNA5SP469 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP469 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP469 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP469 Gene

Proteins for RNA5SP469 Gene

Post-translational modifications for RNA5SP469 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP469 Gene

Domains & Families for RNA5SP469 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP469 Gene

Function for RNA5SP469 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP469 Gene

Localization for RNA5SP469 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP469 Gene

Pathways & Interactions for RNA5SP469 Gene

SuperPathways for RNA5SP469 Gene

No Data Available

Interacting Proteins for RNA5SP469 Gene

Gene Ontology (GO) - Biological Process for RNA5SP469 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP469 Gene

Transcripts for RNA5SP469 Gene

mRNA/cDNA for RNA5SP469 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP469 Gene

No ASD Table

Relevant External Links for RNA5SP469 Gene

GeneLoc Exon Structure for
RNA5SP469
ECgene alternative splicing isoforms for
RNA5SP469

Expression for RNA5SP469 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP469 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP469 Gene:

RNA5SP469
genes like me logo Genes that share expression patterns with RNA5SP469: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNA5SP469 Gene

Orthologs for RNA5SP469 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP469 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 72 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 35
  • 67 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 35
  • 59 (a)
OneToOne
mouse
(Mus musculus)
Mammalia n-R5s189 35
  • 52 (a)
ManyToMany
Species where no ortholog for RNA5SP469 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP469 Gene

ENSEMBL:
Gene Tree for RNA5SP469 (if available)
TreeFam:
Gene Tree for RNA5SP469 (if available)

Paralogs for RNA5SP469 Gene

No data available for Paralogs for RNA5SP469 Gene

Variants for RNA5SP469 Gene

Relevant External Links for RNA5SP469 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP469

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP469 Gene

Disorders for RNA5SP469 Gene

No disorders were found for RNA5SP469 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP469 Gene

Publications for RNA5SP469 Gene

No publications were found for RNA5SP469 Gene.

Products for RNA5SP469 Gene

Sources for RNA5SP469 Gene

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