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Aliases for RNA5SP458 Gene

Aliases for RNA5SP458 Gene

  • RNA, 5S Ribosomal Pseudogene 458 2 3 5
  • RNA, 5S Ribosomal 458 2 3
  • RN5S458 3

External Ids for RNA5SP458 Gene

Previous HGNC Symbols for RNA5SP458 Gene

  • RN5S458

Previous GeneCards Identifiers for RNA5SP458 Gene

  • GC18P047848

Summaries for RNA5SP458 Gene

GeneCards Summary for RNA5SP458 Gene

RNA5SP458 (RNA, 5S Ribosomal Pseudogene 458) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP458 Gene

Genomics for RNA5SP458 Gene

Regulatory Elements for RNA5SP458 Gene

Enhancers for RNA5SP458 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18F050355 1.2 Ensembl ENCODE 0.3 +37.8 37801 1.6 HDGF PKNOX1 TBL1XR1 WRNIP1 KLF17 ARID4B ZNF2 RAD21 RFX5 ZNF121 CXXC1 MBD1 LOC105372114 RNA5SP458
GH18F050372 1.3 Ensembl ENCODE 0.2 +55.4 55398 3.3 PKNOX1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF263 SP3 SP5 SMAD4 DYM RPL17 MEX3C SKA1 LOC105372114 RNA5SP458
GH18F050335 0.6 ENCODE 0.3 +15.8 15764 0.2 MTA2 EBF1 TBX21 EP300 EED IKZF1 TCF7 MLLT1 CREM SKA1 RNA5SP458 LOC105372114
GH18F050349 0.4 Ensembl 0.3 +30.5 30538 0.5 HLF SKA1 LOC105372114 RNA5SP458
GH18F050334 0.2 Ensembl 0.3 +15.3 15299 0.2 SKA1 RNA5SP458 LOC105372114
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP458 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP458 Gene

Chromosome:
18
Start:
50,319,002 bp from pter
End:
50,319,120 bp from pter
Size:
119 bases
Orientation:
Plus strand

Genomic View for RNA5SP458 Gene

Genes around RNA5SP458 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP458 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP458 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP458 Gene

Proteins for RNA5SP458 Gene

Post-translational modifications for RNA5SP458 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP458 Gene

Domains & Families for RNA5SP458 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP458 Gene

Function for RNA5SP458 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP458 Gene

Localization for RNA5SP458 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP458 Gene

Pathways & Interactions for RNA5SP458 Gene

SuperPathways for RNA5SP458 Gene

No Data Available

Interacting Proteins for RNA5SP458 Gene

Gene Ontology (GO) - Biological Process for RNA5SP458 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP458 Gene

Transcripts for RNA5SP458 Gene

mRNA/cDNA for RNA5SP458 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP458 Gene

No ASD Table

Relevant External Links for RNA5SP458 Gene

GeneLoc Exon Structure for
RNA5SP458
ECgene alternative splicing isoforms for
RNA5SP458

Expression for RNA5SP458 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP458 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP458 Gene:

RNA5SP458
genes like me logo Genes that share expression patterns with RNA5SP458: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNA5SP458 Gene

Orthologs for RNA5SP458 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP458 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 35
  • 66 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 64 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 35 35
  • 57 (a)
OneToMany
mouse
(Mus musculus)
Mammalia n-R5s29 35
  • 53 (a)
ManyToMany
Species where no ortholog for RNA5SP458 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP458 Gene

ENSEMBL:
Gene Tree for RNA5SP458 (if available)
TreeFam:
Gene Tree for RNA5SP458 (if available)

Paralogs for RNA5SP458 Gene

No data available for Paralogs for RNA5SP458 Gene

Variants for RNA5SP458 Gene

Relevant External Links for RNA5SP458 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP458

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP458 Gene

Disorders for RNA5SP458 Gene

No disorders were found for RNA5SP458 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP458 Gene

Publications for RNA5SP458 Gene

No publications were found for RNA5SP458 Gene.

Products for RNA5SP458 Gene

Sources for RNA5SP458 Gene

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