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Aliases for RNA5SP457 Gene

Subcategory (RNA class) for RNA5SP457 Gene

rRNA

Aliases for RNA5SP457 Gene

  • RNA, 5S Ribosomal Pseudogene 457 2 3 5
  • RNA, 5S Ribosomal 457 2 3
  • RN5S457 3

External Ids for RNA5SP457 Gene

ORGUL Members for RNA5SP457 Gene

Previous HGNC Symbols for RNA5SP457 Gene

  • RN5S457

Previous GeneCards Identifiers for RNA5SP457 Gene

  • GC18M047474

Summaries for RNA5SP457 Gene

GeneCards Summary for RNA5SP457 Gene

RNA5SP457 (RNA, 5S Ribosomal Pseudogene 457) is a Pseudogene, and is affiliated with the rRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP457 Gene

Genomics for RNA5SP457 Gene

Regulatory Elements for RNA5SP457 Gene

Enhancers for RNA5SP457 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18G049959 0.7 ENCODE 0.4 -13.0 -12987 0.1 PKNOX1 BMI1 EBF1 EED ETV6 RELB IKZF2 MTA2 NR2F1 BHLHE40 GC18M049947 RNA5SP457 ENSG00000267196
GH18G049966 0.9 ENCODE 0.3 -20.8 -20817 2.0 HNRNPUL1 TBP FOXA2 ARID4B ZNF48 RAD21 RARA YY1 IKZF2 CREM ENSG00000267196 GC18M049947 RNA5SP457
GH18G049920 0.6 ENCODE 0.3 +25.1 25099 0.9 GATA3 JUND ZNF692 FOS PRDM1 EP300 ACAA2 GC18M049947 RNA5SP457 GC18M049872 ENSG00000201668
GH18G049891 0.7 ENCODE 0.2 +53.6 53617 1.7 JUN MAFG FOSL1 JUND ZNF316 HDAC2 GATA2 FOS KDM1A EMSY ACAA2 MYO5B GC18M049872 ENSG00000201668 RNA5SP457 GC18M049947
GH18G049898 0.7 ENCODE 0.2 +47.7 47734 0.1 ATF1 SAP130 ARID4B ZSCAN9 ZNF143 RCOR1 CREM MIER1 REST MIER2 ENSG00000201668 GC18M049872 RNA5SP457 GC18M049947
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP457 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP457 Gene

Chromosome:
18
Start:
49,946,266 bp from pter
End:
49,946,389 bp from pter
Size:
124 bases
Orientation:
Minus strand

Genomic View for RNA5SP457 Gene

Genes around RNA5SP457 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP457 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP457 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP457 Gene

Proteins for RNA5SP457 Gene

Post-translational modifications for RNA5SP457 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP457 Gene

Domains & Families for RNA5SP457 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP457 Gene

Function for RNA5SP457 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP457 Gene

Localization for RNA5SP457 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP457 Gene

Pathways & Interactions for RNA5SP457 Gene

SuperPathways for RNA5SP457 Gene

No Data Available

Interacting Proteins for RNA5SP457 Gene

Gene Ontology (GO) - Biological Process for RNA5SP457 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP457 Gene

Drugs & Compounds for RNA5SP457 Gene

No Compound Related Data Available

Transcripts for RNA5SP457 Gene

mRNA/cDNA for RNA5SP457 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP457 Gene

No ASD Table

Relevant External Links for RNA5SP457 Gene

GeneLoc Exon Structure for
RNA5SP457
ECgene alternative splicing isoforms for
RNA5SP457

Expression for RNA5SP457 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP457 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP457 Gene:

RNA5SP457
genes like me logo Genes that share expression patterns with RNA5SP457: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP457 Gene

Orthologs for RNA5SP457 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP457 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 75 (a)
ManyToMany
Species where no ortholog for RNA5SP457 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP457 Gene

ENSEMBL:
Gene Tree for RNA5SP457 (if available)
TreeFam:
Gene Tree for RNA5SP457 (if available)

Paralogs for RNA5SP457 Gene

No data available for Paralogs for RNA5SP457 Gene

Variants for RNA5SP457 Gene

Relevant External Links for RNA5SP457 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP457

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP457 Gene

Disorders for RNA5SP457 Gene

No disorders were found for RNA5SP457 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP457 Gene

Publications for RNA5SP457 Gene

No publications were found for RNA5SP457 Gene.

Products for RNA5SP457 Gene

Sources for RNA5SP457 Gene

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