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Aliases for RNA5SP445 Gene

Aliases for RNA5SP445 Gene

  • RNA, 5S Ribosomal Pseudogene 445 2 3 5
  • RNA, 5S Ribosomal 445 2 3
  • RN5S445 3

External Ids for RNA5SP445 Gene

Previous HGNC Symbols for RNA5SP445 Gene

  • RN5S445

Previous GeneCards Identifiers for RNA5SP445 Gene

  • GC17P064638

Summaries for RNA5SP445 Gene

GeneCards Summary for RNA5SP445 Gene

RNA5SP445 (RNA, 5S Ribosomal Pseudogene 445) is a Pseudogene.

Additional gene information for RNA5SP445 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP445 Gene

Genomics for RNA5SP445 Gene

Regulatory Elements for RNA5SP445 Gene

Enhancers for RNA5SP445 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H066673 1.4 FANTOM5 Ensembl ENCODE 0.3 +34.7 34722 1 HDGF PKNOX1 NFIB SIN3A BMI1 ZBTB7B RAD21 RFX5 ELK1 HSF1 HELZ APOH ENSG00000229330 RNA5SP445
GH17H066661 1 ENCODE 0.3 +22.3 22309 0 PKNOX1 ATF1 FEZF1 ATF7 FOS DEK TSHZ1 SMARCA4 STAT3 HNF4A ENSG00000229330 RNA5SP445
GH17H066649 0.7 FANTOM5 ENCODE 0.4 +11.1 11084 0 HDGF RNA5SP445 ENSG00000229330
GH17H066652 0.7 ENCODE 0.4 +15.4 15446 3 ATF1 TAL1 EBF1 BATF FOSL1 TCF12 ZFHX2 JUND EGR1 NFE2 APOH CACNG4 RNA5SP445 ENSG00000229330
GH17H066667 0.8 ENCODE 0.3 +28.3 28349 0 PKNOX1 BMI1 EBF1 ZFHX2 FOXK2 EGR1 ATF7 RUNX3 IKZF2 EGR2 ENSG00000229330 RNA5SP445
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP445 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP445 Gene

Chromosome:
17
Start:
66,639,269 bp from pter
End:
66,639,383 bp from pter
Size:
115 bases
Orientation:
Plus strand

Genomic View for RNA5SP445 Gene

Genes around RNA5SP445 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP445 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP445 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP445 Gene

Proteins for RNA5SP445 Gene

Post-translational modifications for RNA5SP445 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP445 Gene

Domains & Families for RNA5SP445 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP445 Gene

Function for RNA5SP445 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RNA5SP445
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP445 Gene

Localization for RNA5SP445 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP445 Gene

Pathways & Interactions for RNA5SP445 Gene

SuperPathways for RNA5SP445 Gene

No Data Available

Interacting Proteins for RNA5SP445 Gene

Gene Ontology (GO) - Biological Process for RNA5SP445 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP445 Gene

Drugs & Compounds for RNA5SP445 Gene

No Compound Related Data Available

Transcripts for RNA5SP445 Gene

mRNA/cDNA for RNA5SP445 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RNA5SP445
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP445 Gene

No ASD Table

Relevant External Links for RNA5SP445 Gene

GeneLoc Exon Structure for
RNA5SP445
ECgene alternative splicing isoforms for
RNA5SP445

Expression for RNA5SP445 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP445 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP445 Gene:

RNA5SP445
genes like me logo Genes that share expression patterns with RNA5SP445: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP445 Gene

Orthologs for RNA5SP445 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP445 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 34
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 34
  • 69 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 34
  • 52 (a)
OneToMany
Species where no ortholog for RNA5SP445 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP445 Gene

ENSEMBL:
Gene Tree for RNA5SP445 (if available)
TreeFam:
Gene Tree for RNA5SP445 (if available)

Paralogs for RNA5SP445 Gene

No data available for Paralogs for RNA5SP445 Gene

Variants for RNA5SP445 Gene

Relevant External Links for RNA5SP445 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP445

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP445 Gene

Disorders for RNA5SP445 Gene

No disorders were found for RNA5SP445 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP445 Gene

Publications for RNA5SP445 Gene

No publications were found for RNA5SP445 Gene.

Products for RNA5SP445 Gene

Sources for RNA5SP445 Gene

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