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Aliases for RNA5SP443 Gene

Subcategory (RNA class) for RNA5SP443 Gene

rRNA

Aliases for RNA5SP443 Gene

  • RNA, 5S Ribosomal Pseudogene 443 2 3 5
  • RNA, 5S Ribosomal 443 2 3
  • RN5S443 3

External Ids for RNA5SP443 Gene

ORGUL Members for RNA5SP443 Gene

Previous HGNC Symbols for RNA5SP443 Gene

  • RN5S443

Previous GeneCards Identifiers for RNA5SP443 Gene

  • GC17M043408
  • GC17M043435
  • GC17M043468
  • GC17M043536

Summaries for RNA5SP443 Gene

GeneCards Summary for RNA5SP443 Gene

RNA5SP443 (RNA, 5S Ribosomal Pseudogene 443) is a Pseudogene, and is affiliated with the rRNA class.

Additional gene information for RNA5SP443 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP443 Gene

Genomics for RNA5SP443 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP443 Gene

Promoters and enhancers for RNA5SP443 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I045325 Enhancer 0.3 dbSUPER 550.8 +1.6 1556 0.7 CEBPB GC17M045328 RNA5SP443 SPATA32 LINC02210 MAP3K14
GH17I045329 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.8 -2.2 -2205 1.1 FOXA2 INSM2 FEZF1 BATF ZNF335 ZNF366 ZSCAN5C SCRT2 ZNF207 ATF7 FMNL1 GC17M045328 RNA5SP443 LOC105371796
GH17I045332 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 -5.9 -5874 2 SMAD1 ATF1 ARNT FEZF1 TCF12 ZNF766 GATA2 KLF7 ATF7 RUNX3 HEXIM2 ENSG00000224505 SPATA32 GC17M045328 RNA5SP443 LOC105371796
GH17I045345 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 -18.5 -18469 1.9 PKNOX1 SMAD1 ARNT FEZF1 ZNF2 ZNF766 ZNF213 REST ZNF592 MEF2D MAP3K14 SPATA32 FMNL1 LINC02210 DCAKD EFTUD2 LRRC37A4P MAPK8IP1P2 DND1P1 KANSL1-AS1
GH17I045340 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -14.6 -14588 2.2 SIN3A ZNF335 GLIS2 ZNF366 SMARCA5 SP3 ELF1 REST ZEB2 SP1 MAP3K14 SPATA32 FMNL1 HIGD1B NMT1 GC17M045328 RNA5SP443 LOC105371796
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNA5SP443 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP443 Gene

Genomic Locations for RNA5SP443 Gene
chr17:45,327,366-45,327,497
(GRCh38/hg38)
Size:
132 bases
Orientation:
Minus strand
chr17:43,404,732-43,404,863
(GRCh37/hg19)

Genomic View for RNA5SP443 Gene

Genes around RNA5SP443 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP443 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP443 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP443 Gene

Proteins for RNA5SP443 Gene

Post-translational modifications for RNA5SP443 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP443 Gene

Domains & Families for RNA5SP443 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP443 Gene

Function for RNA5SP443 Gene

Phenotypes From GWAS Catalog for RNA5SP443 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP443 Gene

Localization for RNA5SP443 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP443 Gene

Pathways & Interactions for RNA5SP443 Gene

SuperPathways for RNA5SP443 Gene

No Data Available

Interacting Proteins for RNA5SP443 Gene

Gene Ontology (GO) - Biological Process for RNA5SP443 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP443 Gene

Drugs & Compounds for RNA5SP443 Gene

No Compound Related Data Available

Transcripts for RNA5SP443 Gene

mRNA/cDNA for RNA5SP443 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP443 Gene

No ASD Table

Relevant External Links for RNA5SP443 Gene

GeneLoc Exon Structure for
RNA5SP443
ECgene alternative splicing isoforms for
RNA5SP443

Expression for RNA5SP443 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP443 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP443 Gene:

RNA5SP443
genes like me logo Genes that share expression patterns with RNA5SP443: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP443 Gene

Orthologs for RNA5SP443 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP443 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 34
  • 72 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia 5S_rRNA 34
  • 69 (a)
OneToMany
Species where no ortholog for RNA5SP443 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP443 Gene

ENSEMBL:
Gene Tree for RNA5SP443 (if available)
TreeFam:
Gene Tree for RNA5SP443 (if available)

Paralogs for RNA5SP443 Gene

No data available for Paralogs for RNA5SP443 Gene

Variants for RNA5SP443 Gene

Additional Variant Information for RNA5SP443 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP443

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP443 Gene

Disorders for RNA5SP443 Gene

No disorders were found for RNA5SP443 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP443 Gene

Publications for RNA5SP443 Gene

  1. DNA sequences and transcription factor interactions of active and inactive forms of mammalian 5 S RNA genes. (PMID: 6203900) Emerson BM … Roeder RG (The Journal of biological chemistry 1984) 3 58

Products for RNA5SP443 Gene

Sources for RNA5SP443 Gene

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