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Aliases for RNA5SP440 Gene

Subcategory (RNA class) for RNA5SP440 Gene

rRNA

Aliases for RNA5SP440 Gene

  • RNA, 5S Ribosomal Pseudogene 440 2 3 5
  • RNA, 5S Ribosomal 440 2 3
  • RN5S440 3

External Ids for RNA5SP440 Gene

ORGUL Members for RNA5SP440 Gene

Previous HGNC Symbols for RNA5SP440 Gene

  • RN5S440

Previous GeneCards Identifiers for RNA5SP440 Gene

  • GC17M036891

Summaries for RNA5SP440 Gene

GeneCards Summary for RNA5SP440 Gene

RNA5SP440 (RNA, 5S Ribosomal Pseudogene 440) is a Pseudogene, and is affiliated with the rRNA class.

Additional gene information for RNA5SP440 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP440 Gene

Genomics for RNA5SP440 Gene

Regulatory Elements for RNA5SP440 Gene

Enhancers for RNA5SP440 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H038735 1.2 ENCODE dbSUPER 0.7 -3.5 -3452 0 HDGF ZSCAN4 ARID4B ZNF76 KLF17 SIN3A ZNF2 RAD21 GLIS2 ZNF143 MLLT6 CWC25 RNA5SP440 GC17M038732 LOC100287808
GH17H038740 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -10.6 -10636 3 PKNOX1 KLF1 NFIB ZSCAN4 BMI1 ZIC2 ZNF121 GLIS2 ZNF366 POLR2A C17orf98 PCGF2 MLLT6 FBXO47 PIP4K2B SOCS7 PSMB3 CISD3 LOC100287808 RNA5SP440
GH17H038739 0.4 dbSUPER 0.4 -7.8 -7839 1 POLR2A MLLT6 PIP4K2B MRPL45 GC17M038732 LOC100287808 RNA5SP440
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP440 on UCSC Golden Path with GeneCards custom track

Promoters for RNA5SP440 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000093809 1620 1401 HDGF ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 ZNF207

Genomic Location for RNA5SP440 Gene

Chromosome:
17
Start:
38,731,802 bp from pter
End:
38,731,920 bp from pter
Size:
119 bases
Orientation:
Minus strand

Genomic View for RNA5SP440 Gene

Genes around RNA5SP440 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP440 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP440 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP440 Gene

Proteins for RNA5SP440 Gene

Post-translational modifications for RNA5SP440 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP440 Gene

Domains & Families for RNA5SP440 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP440 Gene

Function for RNA5SP440 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RNA5SP440
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP440 Gene

Localization for RNA5SP440 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP440 Gene

Pathways & Interactions for RNA5SP440 Gene

SuperPathways for RNA5SP440 Gene

No Data Available

Interacting Proteins for RNA5SP440 Gene

Gene Ontology (GO) - Biological Process for RNA5SP440 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP440 Gene

Drugs & Compounds for RNA5SP440 Gene

No Compound Related Data Available

Transcripts for RNA5SP440 Gene

mRNA/cDNA for RNA5SP440 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RNA5SP440
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP440 Gene

No ASD Table

Relevant External Links for RNA5SP440 Gene

GeneLoc Exon Structure for
RNA5SP440
ECgene alternative splicing isoforms for
RNA5SP440

Expression for RNA5SP440 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP440 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP440 Gene:

RNA5SP440
genes like me logo Genes that share expression patterns with RNA5SP440: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP440 Gene

Orthologs for RNA5SP440 Gene

Evolution for RNA5SP440 Gene

ENSEMBL:
Gene Tree for RNA5SP440 (if available)
TreeFam:
Gene Tree for RNA5SP440 (if available)

No data available for Orthologs for RNA5SP440 Gene

Paralogs for RNA5SP440 Gene

No data available for Paralogs for RNA5SP440 Gene

Variants for RNA5SP440 Gene

Relevant External Links for RNA5SP440 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP440

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP440 Gene

Disorders for RNA5SP440 Gene

No disorders were found for RNA5SP440 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP440 Gene

Publications for RNA5SP440 Gene

No publications were found for RNA5SP440 Gene.

Products for RNA5SP440 Gene

Sources for RNA5SP440 Gene

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