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Aliases for RNA5SP44 Gene

Aliases for RNA5SP44 Gene

  • RNA, 5S Ribosomal Pseudogene 44 2 3 5
  • RNA, 5S Ribosomal 44 2 3
  • RN5S44 3

External Ids for RNA5SP44 Gene

Previous HGNC Symbols for RNA5SP44 Gene

  • RN5S44

Previous GeneCards Identifiers for RNA5SP44 Gene

  • GC01M039622

Summaries for RNA5SP44 Gene

GeneCards Summary for RNA5SP44 Gene

RNA5SP44 (RNA, 5S Ribosomal Pseudogene 44) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP44 Gene

Genomics for RNA5SP44 Gene

Regulatory Elements for RNA5SP44 Gene

Enhancers for RNA5SP44 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F039152 1 Ensembl ENCODE 0.8 -0.1 -105 3.2 HDAC1 PKNOX1 SAP130 ZNF644 RAD21 ZNF316 MAFK SMARCE1 HLF BHLHE40 RNU6-608P OXCT2P1 MACF1 RNA5SP44 ENSG00000270040
GH01F039149 0.4 Ensembl 0.8 +5.0 4996 0.2 HDGF SMARCE1 BCOR HDAC1 SMARCA5 MAFG DPF2 ARID1B ZNF316 SMARCA4 RNU6-608P ENSG00000226438 RNA5SP44 GC01M039121
GH01F039150 0.4 Ensembl 0.8 +4.2 4196 0.2 RFX1 PRDM10 RNU6-608P ENSG00000226438 RNA5SP44 GC01M039121
GH01F039157 1.1 Ensembl ENCODE 0.4 -5.0 -5005 4.6 HDGF PKNOX1 ATF1 CREB3L1 ARID4B SIN3A FEZF1 DMAP1 YY1 SLC30A9 MACF1 ENSG00000182109 RNU6-608P ENSG00000226438 KIAA0754 RNA5SP44 ENSG00000270040
GH01F039144 0.2 Ensembl 0.4 +9.3 9295 0.4 OSR2 SCRT1 SCRT2 RNU6-608P ENSG00000226438 KIAA0754 MACF1 RNA5SP44 GC01M039121
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNA5SP44 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP44 Gene

Chromosome:
1
Start:
39,154,164 bp from pter
End:
39,154,296 bp from pter
Size:
133 bases
Orientation:
Minus strand

Genomic View for RNA5SP44 Gene

Genes around RNA5SP44 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP44 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP44 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP44 Gene

Proteins for RNA5SP44 Gene

Post-translational modifications for RNA5SP44 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP44 Gene

Domains & Families for RNA5SP44 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP44 Gene

Function for RNA5SP44 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP44 Gene

Localization for RNA5SP44 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP44 Gene

Pathways & Interactions for RNA5SP44 Gene

SuperPathways for RNA5SP44 Gene

No Data Available

Interacting Proteins for RNA5SP44 Gene

Gene Ontology (GO) - Biological Process for RNA5SP44 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP44 Gene

Transcripts for RNA5SP44 Gene

mRNA/cDNA for RNA5SP44 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP44 Gene

No ASD Table

Relevant External Links for RNA5SP44 Gene

GeneLoc Exon Structure for
RNA5SP44
ECgene alternative splicing isoforms for
RNA5SP44

Expression for RNA5SP44 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP44 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP44 Gene:

RNA5SP44
genes like me logo Genes that share expression patterns with RNA5SP44: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNA5SP44 Gene

Orthologs for RNA5SP44 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP44 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 75 (a)
ManyToMany
Species where no ortholog for RNA5SP44 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP44 Gene

ENSEMBL:
Gene Tree for RNA5SP44 (if available)
TreeFam:
Gene Tree for RNA5SP44 (if available)

Paralogs for RNA5SP44 Gene

No data available for Paralogs for RNA5SP44 Gene

Variants for RNA5SP44 Gene

Relevant External Links for RNA5SP44 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP44

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP44 Gene

Disorders for RNA5SP44 Gene

No disorders were found for RNA5SP44 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP44 Gene

Publications for RNA5SP44 Gene

No publications were found for RNA5SP44 Gene.

Products for RNA5SP44 Gene

Sources for RNA5SP44 Gene

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