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Aliases for RNA5SP435 Gene

Subcategory (RNA class) for RNA5SP435 Gene

rRNA

Aliases for RNA5SP435 Gene

  • RNA, 5S Ribosomal Pseudogene 435 2 3 5
  • RNA, 5S Ribosomal 435 2 3
  • RN5S435 3

External Ids for RNA5SP435 Gene

ORGUL Members for RNA5SP435 Gene

Previous HGNC Symbols for RNA5SP435 Gene

  • RN5S435

Previous GeneCards Identifiers for RNA5SP435 Gene

  • GC17M006506

Summaries for RNA5SP435 Gene

GeneCards Summary for RNA5SP435 Gene

RNA5SP435 (RNA, 5S Ribosomal Pseudogene 435) is a Pseudogene, and is affiliated with the rRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP435 Gene

Genomics for RNA5SP435 Gene

Regulatory Elements for RNA5SP435 Gene

Enhancers for RNA5SP435 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G006599 0.9 Ensembl ENCODE 0.7 +1.4 1431 1.2 L3MBTL2 MAFG MAX MNT ZNF316 FOXK2 SMARCA4 IKZF1 NFE2L1 NFE2 KIAA0753 PITPNM3 TXNDC17 C17orf100 MED31 SLC13A5 GC17M006601 RNA5SP435 GC17M006460
GH17G006574 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +25.4 25408 1.8 HDGF CBX3 TBL1XR1 ARNT NFRKB GATA2 EGR1 FOS IKZF2 CREM KIAA0753 ENSG00000261996 GC17M006460 RNA5SP435 GC17M006601
GH17G006591 0.7 ENCODE 0.4 +9.1 9112 1.6 SOX5 SOX13 GATAD2A CTCF TEAD1 CHD1 SIN3A RBBP5 NR3C1 HNF1A ENSG00000261996 RNA5SP435 GC17M006601 GC17M006460
GH17G006589 0.7 ENCODE 0.4 +11.1 11067 1.9 ESRRA USF1 NR2F1 HLF CEBPB USF2 MNT REST ZNF354B NR2F2 KIAA0753 ENSG00000261996 RNA5SP435 GC17M006601 GC17M006460
GH17G006578 0.6 ENCODE 0.3 +22.4 22410 1.1 BCOR CTCF ZMYM3 ZNF664 GATA3 ZNF366 ADNP RCOR1 KDM1A FOSL2 KIAA0753 ENSG00000261996 GC17M006460 GC17M006601 RNA5SP435
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP435 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP435 Gene

Chromosome:
17
Start:
6,600,944 bp from pter
End:
6,601,051 bp from pter
Size:
108 bases
Orientation:
Minus strand

Genomic View for RNA5SP435 Gene

Genes around RNA5SP435 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP435 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP435 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP435 Gene

Proteins for RNA5SP435 Gene

Post-translational modifications for RNA5SP435 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP435 Gene

Domains & Families for RNA5SP435 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP435 Gene

Function for RNA5SP435 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP435 Gene

Localization for RNA5SP435 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP435 Gene

Pathways & Interactions for RNA5SP435 Gene

SuperPathways for RNA5SP435 Gene

No Data Available

Interacting Proteins for RNA5SP435 Gene

Gene Ontology (GO) - Biological Process for RNA5SP435 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP435 Gene

Drugs & Compounds for RNA5SP435 Gene

No Compound Related Data Available

Transcripts for RNA5SP435 Gene

mRNA/cDNA for RNA5SP435 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP435 Gene

No ASD Table

Relevant External Links for RNA5SP435 Gene

GeneLoc Exon Structure for
RNA5SP435
ECgene alternative splicing isoforms for
RNA5SP435

Expression for RNA5SP435 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP435 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP435 Gene:

RNA5SP435
genes like me logo Genes that share expression patterns with RNA5SP435: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP435 Gene

Orthologs for RNA5SP435 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNA5SP435 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 99 (a)
OneToOne
Species where no ortholog for RNA5SP435 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP435 Gene

ENSEMBL:
Gene Tree for RNA5SP435 (if available)
TreeFam:
Gene Tree for RNA5SP435 (if available)

Paralogs for RNA5SP435 Gene

No data available for Paralogs for RNA5SP435 Gene

Variants for RNA5SP435 Gene

Relevant External Links for RNA5SP435 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP435

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP435 Gene

Disorders for RNA5SP435 Gene

No disorders were found for RNA5SP435 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP435 Gene

Publications for RNA5SP435 Gene

No publications were found for RNA5SP435 Gene.

Products for RNA5SP435 Gene

Sources for RNA5SP435 Gene

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