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Aliases for RNA5SP394 Gene

Subcategory (RNA class) for RNA5SP394 Gene

rRNA

Aliases for RNA5SP394 Gene

  • RNA, 5S Ribosomal Pseudogene 394 2 3 5
  • RNA, 5S Ribosomal 394 2 3
  • RN5S394 3

External Ids for RNA5SP394 Gene

ORGUL Members for RNA5SP394 Gene

Previous HGNC Symbols for RNA5SP394 Gene

  • RN5S394

Previous GeneCards Identifiers for RNA5SP394 Gene

  • GC15P050276

Summaries for RNA5SP394 Gene

GeneCards Summary for RNA5SP394 Gene

RNA5SP394 (RNA, 5S Ribosomal Pseudogene 394) is a Pseudogene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for RNA5SP394 Gene - the ORGUL cluster for this gene includes several descriptions:

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

  • 5S ribosomal RNA: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

View fRNAdb secondary structures for RNA5SP394

Additional gene information for RNA5SP394 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNA5SP394 Gene

Genomics for RNA5SP394 Gene

Regulatory Elements for RNA5SP394 Gene

Enhancers for RNA5SP394 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15H049984 0.8 ENCODE dbSUPER 0.7 +2.2 2206 0 ZNF217 SMARCE1 CTBP1 GATA3 DPF2 TCF7L2 FOXA1 RNA5SP394 GC15P050107
GH15H050002 1.5 Ensembl ENCODE dbSUPER 0.3 +21.2 21205 1 HDGF PKNOX1 ATF1 FOXA2 ARNT ARID4B SIN3A ZNF143 FOS ATF7 TRPM7 GABPB1-AS1 RNA5SP394 GC15P050107
GH15H050051 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +71.4 71407 5 HDAC1 PKNOX1 FOXA2 NFXL1 RAD21 RFX5 TCF12 ZNF766 GATA2 FOS ATP8B4 ENSG00000259715 SLC27A2 USP8 GABPB1 GC15P050107 RNA5SP394
GH15H049986 0.9 Ensembl ENCODE dbSUPER 0.4 +5.9 5936 3 SPI1 SPPL2A RNA5SP394 GC15P050107
GH15H050064 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +84.1 84085 4 RFX1 ATF1 MAX BMI1 ATF2 NONO POLR2A CREB1 FOS FOXJ2 ATP8B4 GABPB1-IT1 ENSG00000259715 TRPM7 USP8 RPS20P34 ENSG00000259298 DTWD1 ENSG00000259618 AP4E1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP394 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP394 Gene

Chromosome:
15
Start:
49,982,443 bp from pter
End:
49,982,561 bp from pter
Size:
119 bases
Orientation:
Plus strand

Genomic View for RNA5SP394 Gene

Genes around RNA5SP394 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP394 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP394 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP394 Gene

ORGUL Member Location for RNA5SP394 Gene

ORGUL Member Location for RNA5SP394 gene

Proteins for RNA5SP394 Gene

Post-translational modifications for RNA5SP394 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP394 Gene

Domains & Families for RNA5SP394 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP394 Gene

Function for RNA5SP394 Gene

Phenotypes From GWAS Catalog for RNA5SP394 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RNA5SP394
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP394 Gene

Localization for RNA5SP394 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP394 Gene

Pathways & Interactions for RNA5SP394 Gene

SuperPathways for RNA5SP394 Gene

No Data Available

Interacting Proteins for RNA5SP394 Gene

Gene Ontology (GO) - Biological Process for RNA5SP394 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP394 Gene

Drugs & Compounds for RNA5SP394 Gene

No Compound Related Data Available

Transcripts for RNA5SP394 Gene

fRNAdb Secondary structures for RNA5SP394 Gene

  • RF00001;5S_rRNA;AADD01143167.1/15607-15725

mRNA/cDNA for RNA5SP394 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RNA5SP394
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP394 Gene

No ASD Table

Relevant External Links for RNA5SP394 Gene

GeneLoc Exon Structure for
RNA5SP394
ECgene alternative splicing isoforms for
RNA5SP394

Expression for RNA5SP394 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP394 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP394 Gene:

RNA5SP394
genes like me logo Genes that share expression patterns with RNA5SP394: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP394 Gene

Orthologs for RNA5SP394 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP394 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 34
  • 95 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 34
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia n-R5s153 34
  • 75 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 34
  • 75 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 34
  • 74 (a)
OneToOne
Species where no ortholog for RNA5SP394 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP394 Gene

ENSEMBL:
Gene Tree for RNA5SP394 (if available)
TreeFam:
Gene Tree for RNA5SP394 (if available)

Paralogs for RNA5SP394 Gene

No data available for Paralogs for RNA5SP394 Gene

Variants for RNA5SP394 Gene

Relevant External Links for RNA5SP394 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP394

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP394 Gene

Disorders for RNA5SP394 Gene

No disorders were found for RNA5SP394 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP394 Gene

Publications for RNA5SP394 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

Products for RNA5SP394 Gene

Sources for RNA5SP394 Gene

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