Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNA5SP392 Gene

Aliases for RNA5SP392 Gene

  • RNA, 5S Ribosomal Pseudogene 392 2 3 5
  • RNA, 5S Ribosomal 392 2 3
  • RN5S392 3

External Ids for RNA5SP392 Gene

Previous HGNC Symbols for RNA5SP392 Gene

  • RN5S392

Previous GeneCards Identifiers for RNA5SP392 Gene

  • GC15M040627

Summaries for RNA5SP392 Gene

GeneCards Summary for RNA5SP392 Gene

RNA5SP392 (RNA, 5S Ribosomal Pseudogene 392) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP392 Gene

Genomics for RNA5SP392 Gene

Regulatory Elements for RNA5SP392 Gene

Enhancers for RNA5SP392 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G040435 1.5 Ensembl ENCODE dbSUPER 11.4 -107.4 -107369 7.8 PKNOX1 CREB3L1 AGO1 ARID4B SIN3A FEZF1 ZNF48 GLIS2 FOS KDM4B KNSTRN DISP2 IVD C15orf57 CHST14 RPL9P27 PHGR1 C15orf52 RNA5SP392 RPLP0P10
GH15G040420 1.4 Ensembl ENCODE dbSUPER 12.1 -89.7 -89663 2.3 AGO1 ARID4B ZNF48 ZNF121 GLIS2 ZNF143 KLF13 REST KAT8 SMARCA4 KNSTRN IVD DISP2 PHGR1 C15orf52 RNA5SP392 ANKRD63 RPLP0P10 PLCB2 CHST14
GH15G040387 1 Ensembl ENCODE 11.7 -57.5 -57526 3.5 SOX13 MAX CEBPG YY1 ZNF335 ZNF316 ZNF366 PRDM10 MAFK NFE2L2 KNSTRN DISP2 IVD PHGR1 C15orf52 RNA5SP392 CHST14 RPL9P27 RPLP0P10 PLCB2
GH15G040405 1 ENCODE 11.2 -74.3 -74293 1.9 PKNOX1 ARID4B SIN3A DMAP1 ZNF48 YY1 ETS1 FOS ZNF263 SP3 KNSTRN BAHD1 DISP2 PHGR1 C15orf52 RNA5SP392 RPLP0P10 PLCB2 C15orf57 GC15P040411
GH15G040291 0.9 ENCODE 11.3 +40.1 40140 0.9 ATF1 RB1 CREB3L1 FUS KLF17 ARID4B ZBTB40 YY1 THAP11 CEBPB RNA5SP392 C15orf52 PHGR1 DISP2 C15orf56 PAK6 PLCB2 KNSTRN PLCB2-AS1 ENSG00000273855
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP392 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP392 Gene

Chromosome:
15
Start:
40,331,537 bp from pter
End:
40,331,648 bp from pter
Size:
112 bases
Orientation:
Minus strand

Genomic View for RNA5SP392 Gene

Genes around RNA5SP392 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP392 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP392 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP392 Gene

Proteins for RNA5SP392 Gene

Post-translational modifications for RNA5SP392 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP392 Gene

Domains & Families for RNA5SP392 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP392 Gene

Function for RNA5SP392 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP392 Gene

Localization for RNA5SP392 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP392 Gene

Pathways & Interactions for RNA5SP392 Gene

SuperPathways for RNA5SP392 Gene

No Data Available

Interacting Proteins for RNA5SP392 Gene

Gene Ontology (GO) - Biological Process for RNA5SP392 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP392 Gene

Drugs & Compounds for RNA5SP392 Gene

No Compound Related Data Available

Transcripts for RNA5SP392 Gene

mRNA/cDNA for RNA5SP392 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP392 Gene

No ASD Table

Relevant External Links for RNA5SP392 Gene

GeneLoc Exon Structure for
RNA5SP392
ECgene alternative splicing isoforms for
RNA5SP392

Expression for RNA5SP392 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP392 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP392 Gene:

RNA5SP392
genes like me logo Genes that share expression patterns with RNA5SP392: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP392 Gene

Orthologs for RNA5SP392 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP392 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 97 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 35
  • 77 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 5S_rRNA 35
  • 72 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 64 (a)
OneToOne
Species where no ortholog for RNA5SP392 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP392 Gene

ENSEMBL:
Gene Tree for RNA5SP392 (if available)
TreeFam:
Gene Tree for RNA5SP392 (if available)

Paralogs for RNA5SP392 Gene

No data available for Paralogs for RNA5SP392 Gene

Variants for RNA5SP392 Gene

Relevant External Links for RNA5SP392 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP392

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP392 Gene

Disorders for RNA5SP392 Gene

No disorders were found for RNA5SP392 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP392 Gene

Publications for RNA5SP392 Gene

No publications were found for RNA5SP392 Gene.

Products for RNA5SP392 Gene

Sources for RNA5SP392 Gene

Content
Loading form....