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Aliases for RNA5SP389 Gene

Subcategory (RNA class) for RNA5SP389 Gene

rRNA

Aliases for RNA5SP389 Gene

  • RNA, 5S Ribosomal Pseudogene 389 2 3 5
  • RNA, 5S Ribosomal 389 2 3
  • RN5S389 3

External Ids for RNA5SP389 Gene

ORGUL Members for RNA5SP389 Gene

Previous HGNC Symbols for RNA5SP389 Gene

  • RN5S389

Previous GeneCards Identifiers for RNA5SP389 Gene

  • GC14P107094
  • GC14P107097
  • GC14P107100

Summaries for RNA5SP389 Gene

GeneCards Summary for RNA5SP389 Gene

RNA5SP389 (RNA, 5S Ribosomal Pseudogene 389) is a Pseudogene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for RNA5SP389 Gene - the ORGUL cluster for this gene includes several descriptions:

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

  • 5S ribosomal RNA: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNA5SP389 Gene

Genomics for RNA5SP389 Gene

Genomic Location for RNA5SP389 Gene

Chromosome:
14
Start:
106,636,672 bp from pter
End:
106,636,786 bp from pter
Size:
115 bases
Orientation:
Plus strand

Genomic View for RNA5SP389 Gene

Genes around RNA5SP389 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP389 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP389 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for RNA5SP389 Gene

ORGUL Member Location for RNA5SP389 gene

No data available for Regulatory Elements and RefSeq DNA sequence for RNA5SP389 Gene

Proteins for RNA5SP389 Gene

Post-translational modifications for RNA5SP389 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP389 Gene

Domains & Families for RNA5SP389 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP389 Gene

Function for RNA5SP389 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP389 Gene

Localization for RNA5SP389 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP389 Gene

Pathways & Interactions for RNA5SP389 Gene

SuperPathways for RNA5SP389 Gene

No Data Available

Interacting Proteins for RNA5SP389 Gene

Gene Ontology (GO) - Biological Process for RNA5SP389 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP389 Gene

Drugs & Compounds for RNA5SP389 Gene

No Compound Related Data Available

Transcripts for RNA5SP389 Gene

mRNA/cDNA for RNA5SP389 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP389 Gene

No ASD Table

Relevant External Links for RNA5SP389 Gene

GeneLoc Exon Structure for
RNA5SP389
ECgene alternative splicing isoforms for
RNA5SP389

Expression for RNA5SP389 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RNA5SP389 Gene

Orthologs for RNA5SP389 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP389 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia 5S_rRNA 36
  • 84 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm26280 36
  • 67 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 36
  • 70 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 36
  • 88 (a)
ManyToMany
Species with no ortholog for RNA5SP389:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP389 Gene

ENSEMBL:
Gene Tree for RNA5SP389 (if available)
TreeFam:
Gene Tree for RNA5SP389 (if available)

Paralogs for RNA5SP389 Gene

No data available for Paralogs for RNA5SP389 Gene

Variants for RNA5SP389 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for RNA5SP389 Gene

Disorders for RNA5SP389 Gene

No disorders were found for RNA5SP389 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP389 Gene

Publications for RNA5SP389 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M. … Barciszewski J. (Nucleic Acids Res. 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov M.M. … Noller H.F. (Science 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles M.A. … Klug A. (J. Mol. Biol. 2000) 1

Products for RNA5SP389 Gene

Sources for RNA5SP389 Gene

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