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Aliases for RNA5SP388 Gene

Subcategory (RNA class) for RNA5SP388 Gene

rRNA

Aliases for RNA5SP388 Gene

  • RNA, 5S Ribosomal Pseudogene 388 2 3 5
  • RNA, 5S Ribosomal 388 2 3
  • RN5S388 3

External Ids for RNA5SP388 Gene

ORGUL Members for RNA5SP388 Gene

Previous HGNC Symbols for RNA5SP388 Gene

  • RN5S388

Previous GeneCards Identifiers for RNA5SP388 Gene

  • GC14M078646

Summaries for RNA5SP388 Gene

GeneCards Summary for RNA5SP388 Gene

RNA5SP388 (RNA, 5S Ribosomal Pseudogene 388) is a Pseudogene, and is affiliated with the rRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP388 Gene

Genomics for RNA5SP388 Gene

Regulatory Elements for RNA5SP388 Gene

Enhancers for RNA5SP388 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around RNA5SP388 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP388 Gene

Chromosome:
14
Start:
78,177,803 bp from pter
End:
78,177,921 bp from pter
Size:
119 bases
Orientation:
Minus strand

Genomic View for RNA5SP388 Gene

Genes around RNA5SP388 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP388 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP388 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP388 Gene

Proteins for RNA5SP388 Gene

Post-translational modifications for RNA5SP388 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP388 Gene

Domains & Families for RNA5SP388 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP388 Gene

Function for RNA5SP388 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP388 Gene

Localization for RNA5SP388 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP388 Gene

Pathways & Interactions for RNA5SP388 Gene

SuperPathways for RNA5SP388 Gene

No Data Available

Interacting Proteins for RNA5SP388 Gene

Gene Ontology (GO) - Biological Process for RNA5SP388 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP388 Gene

Drugs & Compounds for RNA5SP388 Gene

No Compound Related Data Available

Transcripts for RNA5SP388 Gene

mRNA/cDNA for RNA5SP388 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP388 Gene

No ASD Table

Relevant External Links for RNA5SP388 Gene

GeneLoc Exon Structure for
RNA5SP388
ECgene alternative splicing isoforms for
RNA5SP388

Expression for RNA5SP388 Gene

mRNA expression in normal human tissues for RNA5SP388 Gene

genes like me logo Genes that share expression patterns with RNA5SP388: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RNA5SP388 Gene

Orthologs for RNA5SP388 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP388 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia 5S_rRNA 36
  • 77 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia n-R5s63 36
  • 59 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 36
  • 98 (a)
OneToOne
Species with no ortholog for RNA5SP388:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP388 Gene

ENSEMBL:
Gene Tree for RNA5SP388 (if available)
TreeFam:
Gene Tree for RNA5SP388 (if available)

Paralogs for RNA5SP388 Gene

No data available for Paralogs for RNA5SP388 Gene

Variants for RNA5SP388 Gene

Relevant External Links for RNA5SP388 Gene

HapMap Linkage Disequilibrium report
RNA5SP388

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP388 Gene

Disorders for RNA5SP388 Gene

No disorders were found for RNA5SP388 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP388 Gene

Publications for RNA5SP388 Gene

No publications were found for RNA5SP388 Gene.

Products for RNA5SP388 Gene

Sources for RNA5SP388 Gene

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