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Aliases for RNA5SP382 Gene

Subcategory (RNA class) for RNA5SP382 Gene

rRNA

Aliases for RNA5SP382 Gene

  • RNA, 5S Ribosomal Pseudogene 382 2 3 5
  • RNA, 5S Ribosomal 382 2 3
  • RN5S382 3

External Ids for RNA5SP382 Gene

ORGUL Members for RNA5SP382 Gene

Previous HGNC Symbols for RNA5SP382 Gene

  • RN5S382

Previous GeneCards Identifiers for RNA5SP382 Gene

  • GC14P020886

Summaries for RNA5SP382 Gene

GeneCards Summary for RNA5SP382 Gene

RNA5SP382 (RNA, 5S Ribosomal Pseudogene 382) is a Pseudogene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for RNA5SP382 Gene

  • 5S ribosomal RNA: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNA5SP382 Gene

Genomics for RNA5SP382 Gene

Regulatory Elements for RNA5SP382 Gene

Enhancers for RNA5SP382 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F020375 0.2 ENCODE 11.6 -36.5 -36524 6.7 ELF3 PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF48 RAD21 RARA ZNF335 TEP1 RNA5SP382 CCNB1IP1 SNORD126 RNASE11 ENSG00000259001 ENSG00000222489 ENSG00000254846
GH14F020475 0.6 Ensembl ENCODE 11.3 +62.6 62641 3.4 HDAC1 LEF1 ESRRA TAL1 FEZF1 GLI4 ZIC2 GATA2 POLR2A NCOR1 RNASE10 APEX1 OSGEP RNA5SP382 TEP1 RNASE11 PNP ENSG00000258908
GH14F020459 0.5 ENCODE 11.2 +46.5 46477 3.8 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 YY1 SLC30A9 PARP2 SUPT16H ENSG00000258768 ENSG00000258515 CHD8 OSGEP TMEM55B RNA5SP382 TEP1 TTC5
GH14F020492 1 Ensembl ENCODE 11.1 +79.3 79315 3.8 ZNF493 ZNF2 RAD21 ZNF335 ZNF366 ETV6 FOS ZNF362 SP3 CEBPB ENSG00000258515 OSGEP CHD8 PNP TMEM55B RNA5SP382 TEP1 SUPT16H RNASE10 ENSG00000258908
GH14F020486 1.3 FANTOM5 Ensembl ENCODE 11.1 +74.5 74548 5.5 HDGF PKNOX1 TBL1XR1 RAD21 RARA ETV6 CREM EGR2 CEBPB ELF1 PNP TMEM55B APEX1 OSGEP TEP1 RNA5SP382 OR4L1 ENSG00000258908 RNASE10
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNA5SP382 on UCSC Golden Path with GeneCards custom track

Promoters for RNA5SP382 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001455822 -1887 2201 PKNOX1 WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF48 ZNF2 YY1

Genomic Location for RNA5SP382 Gene

Chromosome:
14
Start:
20,414,987 bp from pter
End:
20,415,098 bp from pter
Size:
112 bases
Orientation:
Plus strand

Genomic View for RNA5SP382 Gene

Genes around RNA5SP382 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP382 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP382 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP382 Gene

Proteins for RNA5SP382 Gene

Post-translational modifications for RNA5SP382 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP382 Gene

Domains & Families for RNA5SP382 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP382 Gene

Function for RNA5SP382 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP382 Gene

Localization for RNA5SP382 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP382 Gene

Pathways & Interactions for RNA5SP382 Gene

SuperPathways for RNA5SP382 Gene

No Data Available

Interacting Proteins for RNA5SP382 Gene

Gene Ontology (GO) - Biological Process for RNA5SP382 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP382 Gene

Transcripts for RNA5SP382 Gene

mRNA/cDNA for RNA5SP382 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP382 Gene

No ASD Table

Relevant External Links for RNA5SP382 Gene

GeneLoc Exon Structure for
RNA5SP382
ECgene alternative splicing isoforms for
RNA5SP382

Expression for RNA5SP382 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP382 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP382 Gene:

RNA5SP382
genes like me logo Genes that share expression patterns with RNA5SP382: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNA5SP382 Gene

Orthologs for RNA5SP382 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP382 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 76 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia 5S_rRNA 35
  • 73 (a)
OneToMany
Species where no ortholog for RNA5SP382 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP382 Gene

ENSEMBL:
Gene Tree for RNA5SP382 (if available)
TreeFam:
Gene Tree for RNA5SP382 (if available)

Paralogs for RNA5SP382 Gene

No data available for Paralogs for RNA5SP382 Gene

Variants for RNA5SP382 Gene

Relevant External Links for RNA5SP382 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP382

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP382 Gene

Disorders for RNA5SP382 Gene

No disorders were found for RNA5SP382 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP382 Gene

Publications for RNA5SP382 Gene

No publications were found for RNA5SP382 Gene.

Products for RNA5SP382 Gene

Sources for RNA5SP382 Gene

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