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Aliases for RNA5SP382 Gene

Subcategory (RNA class) for RNA5SP382 Gene

rRNA

Aliases for RNA5SP382 Gene

  • RNA, 5S Ribosomal Pseudogene 382 2 3 5
  • RNA, 5S Ribosomal 382 2 3
  • RN5S382 3

External Ids for RNA5SP382 Gene

ORGUL Members for RNA5SP382 Gene

Previous HGNC Symbols for RNA5SP382 Gene

  • RN5S382

Previous GeneCards Identifiers for RNA5SP382 Gene

  • GC14P020886

Summaries for RNA5SP382 Gene

GeneCards Summary for RNA5SP382 Gene

RNA5SP382 (RNA, 5S Ribosomal Pseudogene 382) is a Pseudogene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for RNA5SP382 Gene

  • 5S ribosomal RNA: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNA5SP382 Gene

Genomics for RNA5SP382 Gene

Regulatory Elements for RNA5SP382 Gene

Enhancers for RNA5SP382 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14G020488 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.1 +75.4 75434 3.7 HDGF PKNOX1 TBL1XR1 RARA RELB ETV6 IKZF2 CREM EGR2 ELF4 PNP TMEM55B RNA5SP382 TEP1 OR4L1 ENSG00000258908 RNASE10
GH14G020475 1.4 Ensembl ENCODE dbSUPER 11.3 +62.6 62641 3.4 HDAC1 NFIB FEZF1 GLI4 TCF12 GATA2 ETV6 ZBTB2 CEBPB ZNF589 RNASE10 APEX1 OSGEP RNA5SP382 TEP1 RNASE11 PNP ENSG00000258908
GH14G020459 1.4 ENCODE dbSUPER 11.2 +46.5 46477 3.8 HDGF PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 YY1 SUPT16H CHD8 ENSG00000258768 ENSG00000258515 OSGEP TEP1 RNA5SP382 TMEM55B TTC5 PARP2
GH14G020468 1.4 ENCODE dbSUPER 10.9 +56.7 56742 5.9 HDGF FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 PNP SUPT16H TEP1 CHD8 APEX1 TTC5 ENSG00000260830 RNASE10 RNA5SP382 CCNB1IP1
GH14G020493 1.1 Ensembl ENCODE 10.4 +79.9 79884 2.6 ZNF493 ZNF2 ZBTB7B ZNF335 ZNF366 PCBP1 FOS ETV6 RELB IKZF2 ENSG00000258515 OSGEP CHD8 TTC5 SUPT16H RNA5SP382 TEP1 RNASE10 ENSG00000258908
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP382 on UCSC Golden Path with GeneCards custom track

Promoters for RNA5SP382 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000066354 -1887 1801 PKNOX1 ZFP64 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF263

Genomic Location for RNA5SP382 Gene

Chromosome:
14
Start:
20,414,987 bp from pter
End:
20,415,098 bp from pter
Size:
112 bases
Orientation:
Plus strand

Genomic View for RNA5SP382 Gene

Genes around RNA5SP382 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP382 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP382 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP382 Gene

Proteins for RNA5SP382 Gene

Post-translational modifications for RNA5SP382 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP382 Gene

Domains & Families for RNA5SP382 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP382 Gene

Function for RNA5SP382 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP382 Gene

Localization for RNA5SP382 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP382 Gene

Pathways & Interactions for RNA5SP382 Gene

SuperPathways for RNA5SP382 Gene

No Data Available

Interacting Proteins for RNA5SP382 Gene

Gene Ontology (GO) - Biological Process for RNA5SP382 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP382 Gene

Drugs & Compounds for RNA5SP382 Gene

No Compound Related Data Available

Transcripts for RNA5SP382 Gene

mRNA/cDNA for RNA5SP382 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP382 Gene

No ASD Table

Relevant External Links for RNA5SP382 Gene

GeneLoc Exon Structure for
RNA5SP382
ECgene alternative splicing isoforms for
RNA5SP382

Expression for RNA5SP382 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP382 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP382 Gene:

RNA5SP382
genes like me logo Genes that share expression patterns with RNA5SP382: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP382 Gene

Orthologs for RNA5SP382 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP382 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 76 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia 5S_rRNA 35
  • 73 (a)
OneToMany
Species where no ortholog for RNA5SP382 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP382 Gene

ENSEMBL:
Gene Tree for RNA5SP382 (if available)
TreeFam:
Gene Tree for RNA5SP382 (if available)

Paralogs for RNA5SP382 Gene

No data available for Paralogs for RNA5SP382 Gene

Variants for RNA5SP382 Gene

Relevant External Links for RNA5SP382 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP382

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP382 Gene

Disorders for RNA5SP382 Gene

No disorders were found for RNA5SP382 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP382 Gene

Publications for RNA5SP382 Gene

No publications were found for RNA5SP382 Gene.

Products for RNA5SP382 Gene

Sources for RNA5SP382 Gene

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