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Aliases for RNA5SP373 Gene

Aliases for RNA5SP373 Gene

  • RNA, 5S Ribosomal Pseudogene 373 2 3 5
  • RNA, 5S Ribosomal 373 2 3
  • RN5S373 3

External Ids for RNA5SP373 Gene

Previous HGNC Symbols for RNA5SP373 Gene

  • RN5S373

Previous GeneCards Identifiers for RNA5SP373 Gene

  • GC12P111779

Summaries for RNA5SP373 Gene

GeneCards Summary for RNA5SP373 Gene

RNA5SP373 (RNA, 5S Ribosomal Pseudogene 373) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP373 Gene

Genomics for RNA5SP373 Gene

Regulatory Elements for RNA5SP373 Gene

Enhancers for RNA5SP373 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F111367 1.1 ENCODE 0.3 +29.0 28990 3.0 PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF143 KLF13 PAF1 ADAM1A FAM109A TMEM116 RNA5SP373
GH12F111359 1 Ensembl ENCODE 0.3 +21.5 21530 3.5 TFAP4 SAP130 TAL1 THRB RARA ARID1B GATA3 GLIS2 POLR2A GABPB1 FAM109A ALDH2 RNA5SP373
GH12F111331 0.7 ENCODE 0.4 -8.2 -8176 0.2 CTCF ZNF654 ZNF16 KLF4 REST ZNF2 RAD21 GATA3 GLIS2 GLIS1 FAM109A RNA5SP373 LOC105369983
GH12F111353 0.6 ENCODE 0.4 +14.6 14585 0.3 ZMYM3 RAD21 YY1 NR2F2 FOSL1 ATF3 KDM1A ZBTB33 CUX2 RNA5SP373 FAM109A
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP373 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP373 Gene

Chromosome:
12
Start:
111,339,527 bp from pter
End:
111,339,621 bp from pter
Size:
95 bases
Orientation:
Plus strand

Genomic View for RNA5SP373 Gene

Genes around RNA5SP373 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP373 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP373 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP373 Gene

Proteins for RNA5SP373 Gene

Post-translational modifications for RNA5SP373 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP373 Gene

Domains & Families for RNA5SP373 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP373 Gene

Function for RNA5SP373 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP373 Gene

Localization for RNA5SP373 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP373 Gene

Pathways & Interactions for RNA5SP373 Gene

SuperPathways for RNA5SP373 Gene

No Data Available

Interacting Proteins for RNA5SP373 Gene

Gene Ontology (GO) - Biological Process for RNA5SP373 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP373 Gene

Transcripts for RNA5SP373 Gene

mRNA/cDNA for RNA5SP373 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP373 Gene

No ASD Table

Relevant External Links for RNA5SP373 Gene

GeneLoc Exon Structure for
RNA5SP373
ECgene alternative splicing isoforms for
RNA5SP373

Expression for RNA5SP373 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP373 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP373 Gene:

RNA5SP373
genes like me logo Genes that share expression patterns with RNA5SP373: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNA5SP373 Gene

Orthologs for RNA5SP373 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP373 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 65 (a)
OneToMany
mouse
(Mus musculus)
Mammalia n-R5s19 35
  • 54 (a)
OneToMany
Species where no ortholog for RNA5SP373 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP373 Gene

ENSEMBL:
Gene Tree for RNA5SP373 (if available)
TreeFam:
Gene Tree for RNA5SP373 (if available)

Paralogs for RNA5SP373 Gene

No data available for Paralogs for RNA5SP373 Gene

Variants for RNA5SP373 Gene

Relevant External Links for RNA5SP373 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP373

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP373 Gene

Disorders for RNA5SP373 Gene

No disorders were found for RNA5SP373 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP373 Gene

Publications for RNA5SP373 Gene

No publications were found for RNA5SP373 Gene.

Products for RNA5SP373 Gene

Sources for RNA5SP373 Gene

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