Free for academic non-profit institutions. Other users need a Commercial license

RNA5SP351 Gene(Pseudogene)

RNA, 5S Ribosomal Pseudogene 351

GCID:
GC11P111928
GIFtS:
15
Genes Participants
UDN Logo

Aliases for RNA5SP351 Gene

Subcategory (RNA class) for RNA5SP351 Gene

rRNA

Aliases for RNA5SP351 Gene

  • RNA, 5S Ribosomal Pseudogene 351 2 3 5
  • RNA, 5S Ribosomal 351 2 3
  • RN5S351 3

External Ids for RNA5SP351 Gene

ORGUL Members for RNA5SP351 Gene

Previous HGNC Symbols for RNA5SP351 Gene

  • RN5S351

Previous GeneCards Identifiers for RNA5SP351 Gene

  • GC11P111801
  • GC11P111803

Summaries for RNA5SP351 Gene

GeneCards Summary for RNA5SP351 Gene

RNA5SP351 (RNA, 5S Ribosomal Pseudogene 351) is a Pseudogene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for RNA5SP351 Gene - the ORGUL cluster for this gene includes several descriptions:

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

  • 5S ribosomal RNA: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

View fRNAdb secondary structures for RNA5SP351

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNA5SP351 Gene

Genomics for RNA5SP351 Gene

Products:

  1. Regulatory Element

Regulatory Elements for RNA5SP351 Gene

Enhancers for RNA5SP351 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G111981 1.4 Ensembl ENCODE dbSUPER 11.8 +54.5 54502 2.9 HDAC1 FOXA2 ARNT WRNIP1 ARID4B RAD21 YY1 ZNF766 CREM REST RNA5SP351 DIXDC1 CRYAB C11orf52 HSPB2 HSPB2-C11orf52 PPP2R1B ENSG00000255334 ENSG00000255286
GH11G111949 0.7 ENCODE 12.4 +21.3 21312 0.2 PKNOX1 DPF2 NR2F2 TCF12 ARID1B ZFHX2 EGR1 IKZF1 NR2F6 ZNF24 DIXDC1 RNA5SP351 CRYAB C11orf52 HSPB2 HSPB2-C11orf52 SDHD TIMM8B PPP2R1B FDXACB1
GH11G111950 0.6 ENCODE 12.4 +21.6 21552 0.2 ARID1B TCF12 ZFHX2 IKZF1 NR2F6 ZNF24 NR2F2 EGR2 DIXDC1 RNA5SP351 CRYAB C11orf52 HSPB2 HSPB2-C11orf52 SDHD TIMM8B FDXACB1 C11orf1
GH11G112082 0.6 ENCODE 10.1 +154.7 154704 1.9 FOSL1 SSRP1 ZNF316 ZNF610 BHLHE40 EMSY PRDM1 RBFOX2 RNA5SP351 DIXDC1 CRYAB C11orf52 HSPB2 HSPB2-C11orf52 TEX12 PPP2R1B SDHD PIR48704
GH11G111986 0.2 dbSUPER 11.7 +58.5 58497 0.9 DIXDC1 RNA5SP351 PIH1D2 C11orf57 CRYAB C11orf52 PPIHP1 ENSG00000255334 ENSG00000255286
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP351 on UCSC Golden Path with GeneCards custom track

Promoters for RNA5SP351 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000044930 -1200 801 HDGF PKNOX1 ZFP64 ARID4B SIN3A DMAP1 SLC30A9 ZNF143 FOS SP3

Genomic Location for RNA5SP351 Gene

Chromosome:
11
Start:
111,928,400 bp from pter
End:
111,928,508 bp from pter
Size:
109 bases
Orientation:
Plus strand

Genomic View for RNA5SP351 Gene

Genes around RNA5SP351 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP351 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP351 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

ORGUL Member Location for RNA5SP351 Gene

ORGUL Member Location for RNA5SP351 gene

No data available for RefSeq DNA sequence for RNA5SP351 Gene

Proteins for RNA5SP351 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNA5SP351 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP351 Gene

Domains & Families for RNA5SP351 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP351 Gene

Function for RNA5SP351 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP351 Gene

Localization for RNA5SP351 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP351 Gene

Pathways & Interactions for RNA5SP351 Gene

SuperPathways for RNA5SP351 Gene

PathCards logo More details on SuperPathways for RNA5SP351
No Data Available

Interacting Proteins for RNA5SP351 Gene

Gene Ontology (GO) - Biological Process for RNA5SP351 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP351 Gene

Drugs & Compounds for RNA5SP351 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNA5SP351 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

fRNAdb Secondary structures for RNA5SP351 Gene

  • RF00001;5S_rRNA;AADD01119442.1/420-528

mRNA/cDNA for RNA5SP351 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP351 Gene

No ASD Table

Relevant External Links for RNA5SP351 Gene

GeneLoc Exon Structure for
RNA5SP351
ECgene alternative splicing isoforms for
RNA5SP351

Expression for RNA5SP351 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP351 Gene

mRNA expression in normal human tissues for RNA5SP351 Gene
mRNA expression by GTEx for RNA5SP351 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP351 Gene:

RNA5SP351
genes like me logo Genes that share expression patterns with RNA5SP351: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP351 Gene

Orthologs for RNA5SP351 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP351 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia 5S_rRNA 35
  • 98 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia 5S_rRNA 35
  • 64 (a)
 ManyToMany
lizard
(Anolis carolinensis)
 Reptilia 5S_rRNA 35
  • 53 (a)
 OneToMany
Species where no ortholog for RNA5SP351 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP351 Gene

ENSEMBL:
Gene Tree for RNA5SP351 (if available)
TreeFam:
Gene Tree for RNA5SP351 (if available)

Paralogs for RNA5SP351 Gene

No data available for Paralogs for RNA5SP351 Gene

Variants for RNA5SP351 Gene

Relevant External Links for RNA5SP351 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP351

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP351 Gene

Disorders for RNA5SP351 Gene

No disorders were found for RNA5SP351 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP351 Gene

Publications for RNA5SP351 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M. … Barciszewski J. (Nucleic Acids Res. 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov M.M. … Noller H.F. (Science 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles M.A. … Klug A. (J. Mol. Biol. 2000) 1

Products for RNA5SP351 Gene

Sources for RNA5SP351 Gene

Content
Loading form....