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Aliases for RNA5SP343 Gene

Subcategory (RNA class) for RNA5SP343 Gene

rRNA

Aliases for RNA5SP343 Gene

  • RNA, 5S Ribosomal Pseudogene 343 2 3
  • RNA, 5S Ribosomal 343 2 3
  • RN5S343 3

External Ids for RNA5SP343 Gene

ORGUL Members for RNA5SP343 Gene

Previous HGNC Symbols for RNA5SP343 Gene

  • RN5S343

Previous GeneCards Identifiers for RNA5SP343 Gene

  • GC11M073912

Summaries for RNA5SP343 Gene

GeneCards Summary for RNA5SP343 Gene

RNA5SP343 (RNA, 5S Ribosomal Pseudogene 343) is a Pseudogene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for RNA5SP343 Gene - the ORGUL cluster for this gene includes several descriptions:

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

  • 5S ribosomal RNA: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

View fRNAdb secondary structures for RNA5SP343

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNA5SP343 Gene

Genomics for RNA5SP343 Gene

Regulatory Elements for RNA5SP343 Gene

Enhancers for RNA5SP343 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G074179 0.8 ENCODE dbSUPER 0.4 +19.3 19314 0.7 JUND ZNF316 NFE2L1 FOS NFE2 MAFK NFE2L2 ENSG00000206913 C2CD3 PPME1 GC11P074171 RNA5SP343
GH11G074173 0.4 Ensembl 0.3 +24.7 24654 0.8 HMBOX1 KDM1A ENSG00000206913 C2CD3 PPME1 GC11P074171 RNA5SP343
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP343 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP343 Gene

Chromosome:
11
Start:
74,198,748 bp from pter
End:
74,198,854 bp from pter
Size:
107 bases
Orientation:
Minus strand

Genomic View for RNA5SP343 Gene

Genes around RNA5SP343 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP343 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP343 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP343 Gene

ORGUL Member Location for RNA5SP343 Gene

ORGUL Member Location for RNA5SP343 gene

Proteins for RNA5SP343 Gene

Post-translational modifications for RNA5SP343 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP343 Gene

Domains & Families for RNA5SP343 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP343 Gene

Function for RNA5SP343 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP343 Gene

Localization for RNA5SP343 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP343 Gene

Pathways & Interactions for RNA5SP343 Gene

SuperPathways for RNA5SP343 Gene

No Data Available

Interacting Proteins for RNA5SP343 Gene

Gene Ontology (GO) - Biological Process for RNA5SP343 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP343 Gene

Drugs & Compounds for RNA5SP343 Gene

No Compound Related Data Available

Transcripts for RNA5SP343 Gene

fRNAdb Secondary structures for RNA5SP343 Gene

  • RF00001;5S_rRNA;AEKP01141576.1/1543-1649

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP343 Gene

No ASD Table

Relevant External Links for RNA5SP343 Gene

GeneLoc Exon Structure for
RNA5SP343
ECgene alternative splicing isoforms for
RNA5SP343

No data available for mRNA/cDNA for RNA5SP343 Gene

Expression for RNA5SP343 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP343 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP343 Gene:

RNA5SP343
genes like me logo Genes that share expression patterns with RNA5SP343: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP343 Gene

Orthologs for RNA5SP343 Gene

No data available for Orthologs and Evolution for RNA5SP343 Gene

Paralogs for RNA5SP343 Gene

No data available for Paralogs for RNA5SP343 Gene

Variants for RNA5SP343 Gene

Relevant External Links for RNA5SP343 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP343

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP343 Gene

Disorders for RNA5SP343 Gene

No disorders were found for RNA5SP343 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP343 Gene

Publications for RNA5SP343 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M. … Barciszewski J. (Nucleic Acids Res. 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov M.M. … Noller H.F. (Science 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles M.A. … Klug A. (J. Mol. Biol. 2000) 1

Products for RNA5SP343 Gene

Sources for RNA5SP343 Gene

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