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Aliases for RNA5SP334 Gene

Subcategory (RNA class) for RNA5SP334 Gene

rRNA

Aliases for RNA5SP334 Gene

  • RNA, 5S Ribosomal Pseudogene 334 2 3 5
  • RNA, 5S Ribosomal 334 2 3
  • RN5S334 3

External Ids for RNA5SP334 Gene

ORGUL Members for RNA5SP334 Gene

Previous HGNC Symbols for RNA5SP334 Gene

  • RN5S334

Previous GeneCards Identifiers for RNA5SP334 Gene

  • GC11P018290

Summaries for RNA5SP334 Gene

GeneCards Summary for RNA5SP334 Gene

RNA5SP334 (RNA, 5S Ribosomal Pseudogene 334) is a Pseudogene, and is affiliated with the rRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP334 Gene

Genomics for RNA5SP334 Gene

Regulatory Elements for RNA5SP334 Gene

Enhancers for RNA5SP334 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G018267 1 Ensembl ENCODE 0.7 +2.0 1976 1.4 HDGF TBP ATF1 EED RELB IKZF2 CREM MTA2 NR2F1 BHLHE40 GTF2H1 HPS5 RNA5SP334
GH11G018279 0.9 Ensembl ENCODE 0.4 +14.9 14855 2.9 PKNOX1 MTA2 ZNF740 ASH2L JUNB DPF2 ARID3A IKZF1 IKZF2 EZH2 GTF2H1 HPS5 LOC494141 LOC645319 LDHA SPTY2D1-AS1 LOC100129966 RNA5SP334
GH11G018277 0.8 Ensembl ENCODE 0.4 +11.5 11469 0.9 BHLHE40 IKZF1 CEBPB ZMYM3 ZNF24 CEBPG HPS5 GTF2H1 RNA5SP334
GH11G018309 1.4 Ensembl ENCODE dbSUPER 0.2 +46.3 46289 5.4 FOXA2 ZFP64 RFX5 YY1 EGR1 RCOR1 RELB ETV6 IKZF2 CREM GTF2H1 SAAL1 TSG101 LDHA LDHC HPS5 LOC100129966 SERGEF RNA5SP334
GH11G018306 0.9 dbSUPER 0.3 +41.4 41406 1.8 HDAC1 PKNOX1 TBL1XR1 ARNT NFRKB GATA2 FOS ETV6 IKZF2 ZBTB11 GTF2H1 LDHC RNA5SP334
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP334 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP334 Gene

Chromosome:
11
Start:
18,266,393 bp from pter
End:
18,266,510 bp from pter
Size:
118 bases
Orientation:
Plus strand

Genomic View for RNA5SP334 Gene

Genes around RNA5SP334 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP334 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP334 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP334 Gene

Proteins for RNA5SP334 Gene

Post-translational modifications for RNA5SP334 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP334 Gene

Domains & Families for RNA5SP334 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP334 Gene

Function for RNA5SP334 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP334 Gene

Localization for RNA5SP334 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP334 Gene

Pathways & Interactions for RNA5SP334 Gene

SuperPathways for RNA5SP334 Gene

No Data Available

Interacting Proteins for RNA5SP334 Gene

Gene Ontology (GO) - Biological Process for RNA5SP334 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP334 Gene

Drugs & Compounds for RNA5SP334 Gene

No Compound Related Data Available

Transcripts for RNA5SP334 Gene

mRNA/cDNA for RNA5SP334 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP334 Gene

No ASD Table

Relevant External Links for RNA5SP334 Gene

GeneLoc Exon Structure for
RNA5SP334
ECgene alternative splicing isoforms for
RNA5SP334

Expression for RNA5SP334 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP334 Gene

mRNA differential expression in normal tissues according to GTEx for RNA5SP334 Gene

This gene is overexpressed in Liver (x48.9).

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP334 Gene:

RNA5SP334
genes like me logo Genes that share expression patterns with RNA5SP334: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP334 Gene

Orthologs for RNA5SP334 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP334 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 100 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 35
  • 71 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 35
  • 69 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 35
  • 73 (a)
OneToMany
Species where no ortholog for RNA5SP334 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP334 Gene

ENSEMBL:
Gene Tree for RNA5SP334 (if available)
TreeFam:
Gene Tree for RNA5SP334 (if available)

Paralogs for RNA5SP334 Gene

No data available for Paralogs for RNA5SP334 Gene

Variants for RNA5SP334 Gene

Relevant External Links for RNA5SP334 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP334

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP334 Gene

Disorders for RNA5SP334 Gene

No disorders were found for RNA5SP334 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP334 Gene

Publications for RNA5SP334 Gene

No publications were found for RNA5SP334 Gene.

Products for RNA5SP334 Gene

Sources for RNA5SP334 Gene

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