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Aliases for RNA5SP317 Gene

Aliases for RNA5SP317 Gene

  • RNA, 5S Ribosomal Pseudogene 317 2 3 5
  • RNA, 5S Ribosomal 317 2 3
  • RN5S317 3

External Ids for RNA5SP317 Gene

Previous HGNC Symbols for RNA5SP317 Gene

  • RN5S317

Previous GeneCards Identifiers for RNA5SP317 Gene

  • GC10M051741

Summaries for RNA5SP317 Gene

GeneCards Summary for RNA5SP317 Gene

RNA5SP317 (RNA, 5S Ribosomal Pseudogene 317) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP317 Gene

Genomics for RNA5SP317 Gene

Regulatory Elements for RNA5SP317 Gene

Enhancers for RNA5SP317 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F050067 1.1 ENCODE 22.3 -88.3 -88312 1.5 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 ZNF416 ZNF143 ZNF207 LINC00843 ERCC6 WASHC2A PGBD3 PARG AGAP6 SGMS1-AS1 RNA5SP317 MAPK6PS6 PGGT1BP1
GH10F049175 1.7 FANTOM5 Ensembl ENCODE 12 +801.6 801580 5.2 PKNOX1 ATF1 CREB3L1 ZNF133 GTF3C2 ELK1 FOS JUNB TBX21 CREB3 C10orf128 LINC00843 ERCC6 PGBD3 RNA5SP317 PARG RPL21P89 FAM170B VSTM4
GH10F049183 1.5 FANTOM5 ENCODE 11.9 +795.4 795411 2.4 PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A YY1 ZNF766 FOS TBX21 C10orf128 RNA5SP317 LINC00843 PGBD3 FAM170B
GH10F050549 1.3 Ensembl ENCODE 11.9 -570.6 -570593 1.7 HDGF PKNOX1 ATF1 ARNT YBX1 CBX5 ELK1 GATA2 NCOA1 REST LINC00843 SGMS1 BEND3P1 RNA5SP317 SGMS1-AS1 SHQ1P1 RNU7-107P AGAP6 PARG GC10P050546
GH10F049187 1.3 FANTOM5 ENCODE 11.9 +790.3 790283 3.8 HDGF PKNOX1 ATF1 ARID4B SIN3A YBX1 YY1 CBX5 ZNF143 JUNB C10orf128 RNA5SP317 LINC00843 PGBD3 GC10P049274
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP317 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP317 Gene

Chromosome:
10
Start:
49,979,665 bp from pter
End:
49,979,780 bp from pter
Size:
116 bases
Orientation:
Minus strand

Genomic View for RNA5SP317 Gene

Genes around RNA5SP317 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP317 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP317 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP317 Gene

Proteins for RNA5SP317 Gene

Post-translational modifications for RNA5SP317 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP317 Gene

Domains & Families for RNA5SP317 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP317 Gene

Function for RNA5SP317 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP317 Gene

Localization for RNA5SP317 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP317 Gene

Pathways & Interactions for RNA5SP317 Gene

SuperPathways for RNA5SP317 Gene

No Data Available

Interacting Proteins for RNA5SP317 Gene

Gene Ontology (GO) - Biological Process for RNA5SP317 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP317 Gene

Transcripts for RNA5SP317 Gene

mRNA/cDNA for RNA5SP317 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP317 Gene

No ASD Table

Relevant External Links for RNA5SP317 Gene

GeneLoc Exon Structure for
RNA5SP317
ECgene alternative splicing isoforms for
RNA5SP317

Expression for RNA5SP317 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP317 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP317 Gene:

RNA5SP317
genes like me logo Genes that share expression patterns with RNA5SP317: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNA5SP317 Gene

Orthologs for RNA5SP317 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP317 Gene

Organism Taxonomy Gene Similarity Type Details
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 35
  • 50 (a)
OneToMany
mouse
(Mus musculus)
Mammalia n-R5s24 35
  • 46 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 35
  • 42 (a)
OneToMany
Species where no ortholog for RNA5SP317 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP317 Gene

ENSEMBL:
Gene Tree for RNA5SP317 (if available)
TreeFam:
Gene Tree for RNA5SP317 (if available)

Paralogs for RNA5SP317 Gene

No data available for Paralogs for RNA5SP317 Gene

Variants for RNA5SP317 Gene

Relevant External Links for RNA5SP317 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP317

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP317 Gene

Disorders for RNA5SP317 Gene

No disorders were found for RNA5SP317 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP317 Gene

Publications for RNA5SP317 Gene

No publications were found for RNA5SP317 Gene.

Products for RNA5SP317 Gene

Sources for RNA5SP317 Gene

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