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Aliases for RNA5SP307 Gene

Subcategory (RNA class) for RNA5SP307 Gene

rRNA

Aliases for RNA5SP307 Gene

  • RNA, 5S Ribosomal Pseudogene 307 2 3
  • RNA, 5S Ribosomal 307 2 3
  • RN5S307 3

External Ids for RNA5SP307 Gene

ORGUL Members for RNA5SP307 Gene

Previous HGNC Symbols for RNA5SP307 Gene

  • RN5S307

Previous GeneCards Identifiers for RNA5SP307 Gene

  • GC10P026799

Summaries for RNA5SP307 Gene

GeneCards Summary for RNA5SP307 Gene

RNA5SP307 (RNA, 5S Ribosomal Pseudogene 307) is a Pseudogene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for RNA5SP307 Gene - the ORGUL cluster for this gene includes several descriptions:

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

  • 5S ribosomal RNA: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNA5SP307 Gene

Genomics for RNA5SP307 Gene

Genomic Location for RNA5SP307 Gene

Start:
26,509,589 bp from pter
End:
26,509,704 bp from pter
Size:
116 bases
Orientation:
Plus strand

Genomic View for RNA5SP307 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNA5SP307 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP307 Gene

ORGUL Member Location for RNA5SP307 Gene

ORGUL Member Location for RNA5SP307 gene

No data available for Regulatory Elements for RNA5SP307 Gene

Proteins for RNA5SP307 Gene

Post-translational modifications for RNA5SP307 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP307 Gene

Domains for RNA5SP307 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP307 Gene

Function for RNA5SP307 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNA5SP307 Gene

Localization for RNA5SP307 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP307 Gene

Pathways for RNA5SP307 Gene

SuperPathways for RNA5SP307 Gene

No Data Available

Interacting Proteins for RNA5SP307 Gene

Gene Ontology (GO) - Biological Process for RNA5SP307 Gene

None

No data available for Pathways by source for RNA5SP307 Gene

Transcripts for RNA5SP307 Gene

mRNA/cDNA for RNA5SP307 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP307 Gene

No ASD Table

Relevant External Links for RNA5SP307 Gene

GeneLoc Exon Structure for
RNA5SP307
ECgene alternative splicing isoforms for
RNA5SP307

Expression for RNA5SP307 Gene

mRNA expression in normal human tissues for RNA5SP307 Gene

genes like me logo Genes that share expressions with RNA5SP307: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for RNA5SP307 Gene

Orthologs for RNA5SP307 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP307 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 36
  • 90 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 36
  • 74 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 5S_rRNA 36
  • 59 (a)
OneToOne
mouse
(Mus musculus)
Mammalia n-R5s180 36
  • 63 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 36
  • 55 (a)
ManyToMany
Species with no ortholog for RNA5SP307:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP307 Gene

ENSEMBL:
Gene Tree for RNA5SP307 (if available)
TreeFam:
Gene Tree for RNA5SP307 (if available)

Paralogs for RNA5SP307 Gene

No data available for Paralogs for RNA5SP307 Gene

Variants for RNA5SP307 Gene

Relevant External Links for RNA5SP307 Gene

HapMap Linkage Disequilibrium report
RNA5SP307

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for RNA5SP307 Gene

Disorders for RNA5SP307 Gene

No disorders were found for RNA5SP307 Gene.

No data available for UniProtKB/Swiss-Prot for RNA5SP307 Gene

Publications for RNA5SP307 Gene

No publications were found for RNA5SP307 Gene.

Products for RNA5SP307 Gene

Sources for RNA5SP307 Gene

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