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Aliases for RNA5SP299 Gene

Subcategory (RNA class) for RNA5SP299 Gene

rRNA

Aliases for RNA5SP299 Gene

  • RNA, 5S Ribosomal Pseudogene 299 2 3 5
  • RNA, 5S Ribosomal 299 2 3
  • RN5S299 3

External Ids for RNA5SP299 Gene

ORGUL Members for RNA5SP299 Gene

Previous HGNC Symbols for RNA5SP299 Gene

  • RN5S299

Summaries for RNA5SP299 Gene

GeneCards Summary for RNA5SP299 Gene

RNA5SP299 (RNA, 5S Ribosomal Pseudogene 299) is a Pseudogene, and is affiliated with the rRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP299 Gene

Genomics for RNA5SP299 Gene

Regulatory Elements for RNA5SP299 Gene

Enhancers for RNA5SP299 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G008628 0.8 ENCODE 0.3 +28.3 28289 0.2 PKNOX1 JUN SIN3A BMI1 ZBTB40 RAD21 MTA3 GATA3 CTBP1 FOSL2 CHCHD3P1 GC10M008656 RNA5SP299
GH10G008702 1 ENCODE 0.2 -46.0 -45994 1.6 PKNOX1 SIN3A FEZF1 ZNF2 ZNF121 ZNF302 FOS KLF7 ZNF548 TSHZ1 KIN GC10P008711 RNA5SP299 GC10M008656
GH10G008640 0.4 ENCODE 0.4 +16.0 15987 0.1 JUND RNA5SP299 GC10M008656 CHCHD3P1
GH10G008639 0.4 ENCODE 0.4 +17.2 17219 0.2 SUZ12 ZNF366 RNA5SP299 CHCHD3P1 GC10M008656
GH10G008641 0.4 ENCODE 0.4 +16.7 16710 0.7 ZNF366 SUZ12 GATA3 RNA5SP299 GC10M008656 CHCHD3P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP299 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP299 Gene

Chromosome:
10
Start:
8,656,716 bp from pter
End:
8,656,831 bp from pter
Size:
116 bases
Orientation:
Minus strand

Genomic View for RNA5SP299 Gene

Genes around RNA5SP299 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP299 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP299 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP299 Gene

Proteins for RNA5SP299 Gene

Post-translational modifications for RNA5SP299 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP299 Gene

Domains & Families for RNA5SP299 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP299 Gene

Function for RNA5SP299 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP299 Gene

Localization for RNA5SP299 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP299 Gene

Pathways & Interactions for RNA5SP299 Gene

SuperPathways for RNA5SP299 Gene

No Data Available

Interacting Proteins for RNA5SP299 Gene

Gene Ontology (GO) - Biological Process for RNA5SP299 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP299 Gene

Transcripts for RNA5SP299 Gene

mRNA/cDNA for RNA5SP299 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP299 Gene

No ASD Table

Relevant External Links for RNA5SP299 Gene

GeneLoc Exon Structure for
RNA5SP299
ECgene alternative splicing isoforms for
RNA5SP299

Expression for RNA5SP299 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP299 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP299 Gene:

RNA5SP299
genes like me logo Genes that share expression patterns with RNA5SP299: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP299 Gene

Orthologs for RNA5SP299 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP299 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 35
  • 69 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 35
  • 52 (a)
OneToOne
Species where no ortholog for RNA5SP299 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP299 Gene

ENSEMBL:
Gene Tree for RNA5SP299 (if available)
TreeFam:
Gene Tree for RNA5SP299 (if available)

Paralogs for RNA5SP299 Gene

No data available for Paralogs for RNA5SP299 Gene

Variants for RNA5SP299 Gene

Relevant External Links for RNA5SP299 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP299

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP299 Gene

Disorders for RNA5SP299 Gene

No disorders were found for RNA5SP299 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP299 Gene

Publications for RNA5SP299 Gene

No publications were found for RNA5SP299 Gene.

Products for RNA5SP299 Gene

Sources for RNA5SP299 Gene

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