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Aliases for RNA5SP290 Gene

Subcategory (RNA class) for RNA5SP290 Gene

rRNA

Aliases for RNA5SP290 Gene

  • RNA, 5S Ribosomal Pseudogene 290 2 3 5
  • RNA, 5S Ribosomal 290 2 3
  • RN5S290 3

External Ids for RNA5SP290 Gene

ORGUL Members for RNA5SP290 Gene

Previous HGNC Symbols for RNA5SP290 Gene

  • RN5S290

Previous GeneCards Identifiers for RNA5SP290 Gene

  • GC09M101910
  • GC09M101911

Summaries for RNA5SP290 Gene

GeneCards Summary for RNA5SP290 Gene

RNA5SP290 (RNA, 5S Ribosomal Pseudogene 290) is a Pseudogene, and is affiliated with the rRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP290 Gene

Genomics for RNA5SP290 Gene

Regulatory Elements for RNA5SP290 Gene

Enhancers for RNA5SP290 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F099150 0.5 ENCODE 0.8 -4.7 -4663 1.1 FOXP2 GC09M099146 RNA5SP290 LOC105376174
GH09F099140 0.5 ENCODE 0.4 +5.1 5081 0.6 CTCF ZNF654 RFX1 TEAD4 TRIM22 REST RAD21 GATA2 ZNF143 SMC3 GC09M099146 RNA5SP290 TGFBR1
GH09F099134 0.9 Ensembl ENCODE 0.4 +10.0 10004 3.5 HDAC1 PKNOX1 TBL1XR1 CEBPB ZEB2 ARID1B NCOR1 PBX2 IKZF1 HMBOX1 LOC105376174 RNA5SP290 GC09M099146 TGFBR1
GH09F099159 1.1 ENCODE 0.4 -13.9 -13858 0.2 SMARCA4 POLR2A SEC61B ALG2 RNA5SP290 GC09M099146 LOC105376174
GH09F099167 0.8 Ensembl ENCODE 0.3 -22.1 -22135 0.6 SEC61B ALG2 TGFBR1 LOC105376174 RNA5SP290 GC09M099146
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNA5SP290 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP290 Gene

Chromosome:
9
Start:
99,145,840 bp from pter
End:
99,145,966 bp from pter
Size:
127 bases
Orientation:
Minus strand

Genomic View for RNA5SP290 Gene

Genes around RNA5SP290 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP290 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP290 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP290 Gene

Proteins for RNA5SP290 Gene

Post-translational modifications for RNA5SP290 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP290 Gene

Domains & Families for RNA5SP290 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP290 Gene

Function for RNA5SP290 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP290 Gene

Localization for RNA5SP290 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP290 Gene

Pathways & Interactions for RNA5SP290 Gene

SuperPathways for RNA5SP290 Gene

No Data Available

Interacting Proteins for RNA5SP290 Gene

Gene Ontology (GO) - Biological Process for RNA5SP290 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP290 Gene

Transcripts for RNA5SP290 Gene

mRNA/cDNA for RNA5SP290 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP290 Gene

No ASD Table

Relevant External Links for RNA5SP290 Gene

GeneLoc Exon Structure for
RNA5SP290
ECgene alternative splicing isoforms for
RNA5SP290

Expression for RNA5SP290 Gene

mRNA expression in normal human tissues for RNA5SP290 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP290 Gene:

RNA5SP290
genes like me logo Genes that share expression patterns with RNA5SP290: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNA5SP290 Gene

Orthologs for RNA5SP290 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP290 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 81 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia 5S_rRNA 35
  • 80 (a)
OneToMany
Species where no ortholog for RNA5SP290 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP290 Gene

ENSEMBL:
Gene Tree for RNA5SP290 (if available)
TreeFam:
Gene Tree for RNA5SP290 (if available)

Paralogs for RNA5SP290 Gene

No data available for Paralogs for RNA5SP290 Gene

Variants for RNA5SP290 Gene

Relevant External Links for RNA5SP290 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP290

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP290 Gene

Disorders for RNA5SP290 Gene

No disorders were found for RNA5SP290 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP290 Gene

Publications for RNA5SP290 Gene

No publications were found for RNA5SP290 Gene.

Products for RNA5SP290 Gene

Sources for RNA5SP290 Gene

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