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Aliases for RNA5SP29 Gene

Aliases for RNA5SP29 Gene

  • RNA, 5S Ribosomal Pseudogene 29 2 3 5
  • RNA, 5S Ribosomal 29 2 3
  • RN5S29 3

External Ids for RNA5SP29 Gene

Previous HGNC Symbols for RNA5SP29 Gene

  • RN5S29

Previous GeneCards Identifiers for RNA5SP29 Gene

  • GC13M051605

Summaries for RNA5SP29 Gene

GeneCards Summary for RNA5SP29 Gene

RNA5SP29 (RNA, 5S Ribosomal Pseudogene 29) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP29 Gene

Genomics for RNA5SP29 Gene

Regulatory Elements for RNA5SP29 Gene

Enhancers for RNA5SP29 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F050989 1 Ensembl ENCODE 0.3 +35.2 35217 6.8 ELF3 CTCF TAL1 ZMYM3 RAD21 FOSL1 POLR2A ETV6 NR2F6 FOS RNASEH2B-AS1 PIR33773 GC13P050971 RNA5SP29
GH13F051069 1.2 Ensembl ENCODE 0.2 -42.3 -42349 0.8 PKNOX1 INSM2 ARID4B SIN3A FEZF1 ZNF2 RAD21 ZNF48 KAT2B ZNF366 GUCY1B2 RNA5SP29
GH13F051048 0.6 ENCODE 0.3 -20.7 -20657 0.6 ATF1 JUND ATF3 CREM ATF2 WDFY2 RNA5SP29 GUCY1B2
GH13F051005 0.6 ENCODE 0.3 +21.3 21262 2.3 GATAD2A RAD51 FOXA3 CEBPA CEBPB KDM6A ZBTB26 RNA5SP29 GC13P050971 PIR33773
GH13F051004 0.6 Ensembl 0.3 +23.3 23252 1.2 GATA3 POLR2A CEBPA ZIC2 GABPA RNA5SP29 GC13P050971 PIR33773
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP29 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP29 Gene

Chromosome:
13
Start:
51,027,747 bp from pter
End:
51,027,852 bp from pter
Size:
106 bases
Orientation:
Minus strand

Genomic View for RNA5SP29 Gene

Genes around RNA5SP29 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP29 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP29 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP29 Gene

Proteins for RNA5SP29 Gene

Post-translational modifications for RNA5SP29 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP29 Gene

Domains & Families for RNA5SP29 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP29 Gene

Function for RNA5SP29 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP29 Gene

Localization for RNA5SP29 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP29 Gene

Pathways & Interactions for RNA5SP29 Gene

SuperPathways for RNA5SP29 Gene

No Data Available

Interacting Proteins for RNA5SP29 Gene

Gene Ontology (GO) - Biological Process for RNA5SP29 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP29 Gene

Transcripts for RNA5SP29 Gene

mRNA/cDNA for RNA5SP29 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP29 Gene

No ASD Table

Relevant External Links for RNA5SP29 Gene

GeneLoc Exon Structure for
RNA5SP29
ECgene alternative splicing isoforms for
RNA5SP29

Expression for RNA5SP29 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP29 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP29 Gene:

RNA5SP29
genes like me logo Genes that share expression patterns with RNA5SP29: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNA5SP29 Gene

Orthologs for RNA5SP29 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP29 Gene

Organism Taxonomy Gene Similarity Type Details
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 35
  • 62 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 58 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 5S_rRNA 35
  • 58 (a)
OneToOne
Species where no ortholog for RNA5SP29 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP29 Gene

ENSEMBL:
Gene Tree for RNA5SP29 (if available)
TreeFam:
Gene Tree for RNA5SP29 (if available)

Paralogs for RNA5SP29 Gene

No data available for Paralogs for RNA5SP29 Gene

Variants for RNA5SP29 Gene

Relevant External Links for RNA5SP29 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP29

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP29 Gene

Disorders for RNA5SP29 Gene

No disorders were found for RNA5SP29 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP29 Gene

Publications for RNA5SP29 Gene

No publications were found for RNA5SP29 Gene.

Products for RNA5SP29 Gene

Sources for RNA5SP29 Gene

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