Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNA5SP288 Gene

Aliases for RNA5SP288 Gene

  • RNA, 5S Ribosomal Pseudogene 288 2 3 5
  • RNA, 5S Ribosomal 288 2 3
  • RN5S288 3

External Ids for RNA5SP288 Gene

Previous HGNC Symbols for RNA5SP288 Gene

  • RN5S288

Previous GeneCards Identifiers for RNA5SP288 Gene

  • GC09M097907

Summaries for RNA5SP288 Gene

GeneCards Summary for RNA5SP288 Gene

RNA5SP288 (RNA, 5S Ribosomal Pseudogene 288) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP288 Gene

Genomics for RNA5SP288 Gene

Regulatory Elements for RNA5SP288 Gene

Enhancers for RNA5SP288 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G095143 1.1 Ensembl ENCODE 0.7 -1.5 -1526 1.8 FOXA2 MLX TAF1 MAX CEBPG DMAP1 RARA YY1 HNF4G CREM RNA5SP288 LOC643342
GH09G095138 0.6 ENCODE 0.7 +3.8 3768 0.2 CTCF ZNF654 SMC3 TRIM22 MAX REST ZBTB33 RAD21 DEK ENSG00000229065 LOC101928119 FBP1 RNA5SP288 PIR45601
GH09G095130 1 Ensembl ENCODE 0.4 +11.2 11188 1.5 CTCF TFAP4 CHD7 RAD21 ZNF143 SMC3 ZNF600 MIXL1 ZNF654 TRIM22 PIR45601 RNA5SP288
GH09G095157 0.9 ENCODE 0.4 -15.2 -15180 0.8 PKNOX1 TBL1XR1 BMI1 RAD21 RFX5 YY1 EGR1 RCOR1 RELB IKZF2 RNA5SP288 LOC643342
GH09G095170 1.2 Ensembl ENCODE 0.3 -28.7 -28697 1.3 HDGF PKNOX1 ATF1 FEZF1 FOS JUNB TSHZ1 TBX21 SMARCA4 PBX2 RNA5SP288 LOC643342
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP288 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP288 Gene

Chromosome:
9
Start:
95,142,449 bp from pter
End:
95,142,541 bp from pter
Size:
93 bases
Orientation:
Minus strand

Genomic View for RNA5SP288 Gene

Genes around RNA5SP288 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP288 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP288 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP288 Gene

Proteins for RNA5SP288 Gene

Post-translational modifications for RNA5SP288 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP288 Gene

Domains & Families for RNA5SP288 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP288 Gene

Function for RNA5SP288 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP288 Gene

Localization for RNA5SP288 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP288 Gene

Pathways & Interactions for RNA5SP288 Gene

SuperPathways for RNA5SP288 Gene

No Data Available

Interacting Proteins for RNA5SP288 Gene

Gene Ontology (GO) - Biological Process for RNA5SP288 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP288 Gene

Drugs & Compounds for RNA5SP288 Gene

No Compound Related Data Available

Transcripts for RNA5SP288 Gene

mRNA/cDNA for RNA5SP288 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP288 Gene

No ASD Table

Relevant External Links for RNA5SP288 Gene

GeneLoc Exon Structure for
RNA5SP288
ECgene alternative splicing isoforms for
RNA5SP288

Expression for RNA5SP288 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP288 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP288 Gene:

RNA5SP288
genes like me logo Genes that share expression patterns with RNA5SP288: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP288 Gene

Orthologs for RNA5SP288 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP288 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 99 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 35
  • 36 (a)
OneToOne
Species where no ortholog for RNA5SP288 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP288 Gene

ENSEMBL:
Gene Tree for RNA5SP288 (if available)
TreeFam:
Gene Tree for RNA5SP288 (if available)

Paralogs for RNA5SP288 Gene

No data available for Paralogs for RNA5SP288 Gene

Variants for RNA5SP288 Gene

Relevant External Links for RNA5SP288 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP288

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP288 Gene

Disorders for RNA5SP288 Gene

No disorders were found for RNA5SP288 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP288 Gene

Publications for RNA5SP288 Gene

No publications were found for RNA5SP288 Gene.

Products for RNA5SP288 Gene

Sources for RNA5SP288 Gene

Content
Loading form....