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Aliases for RNA5SP258 Gene

Subcategory (RNA class) for RNA5SP258 Gene

rRNA

Aliases for RNA5SP258 Gene

  • RNA, 5S Ribosomal Pseudogene 258 2 3 5
  • RNA, 5S Ribosomal 258 2 3
  • RN5S258 3

External Ids for RNA5SP258 Gene

ORGUL Members for RNA5SP258 Gene

Previous HGNC Symbols for RNA5SP258 Gene

  • RN5S258

Previous GeneCards Identifiers for RNA5SP258 Gene

  • GC08P025996

Summaries for RNA5SP258 Gene

GeneCards Summary for RNA5SP258 Gene

RNA5SP258 (RNA, 5S Ribosomal Pseudogene 258) is a Pseudogene, and is affiliated with the rRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP258 Gene

Genomics for RNA5SP258 Gene

Regulatory Elements for RNA5SP258 Gene

Enhancers for RNA5SP258 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F025908 0.2 ENCODE 16.2 -226.9 -226879 3.2 CTCF ZNF2 ZIC2 RAD21 ZNF7 ZNF335 ZNF316 ZBTB48 SCRT2 FOS ENSG00000253342 LOC105379332 RNA5SP258 GC08M025907 ENSG00000254178
GH08F026447 1.3 FANTOM5 Ensembl ENCODE 16.2 +313.5 313505 5.6 HDGF PKNOX1 SIN3A ZNF2 YY1 CBX5 FOS KLF13 ZNF263 SP3 RNA5SP258 LOC100132229 ENSG00000253342 LOC105379332 SDAD1P1 PNMA2 DPYSL2 BNIP3L LOC105379337
GH08F026719 0.4 ENCODE 16.2 +582.8 582836 1.0 HDGF ATF1 ARID4B SIN3A FEZF1 ZNF2 ZNF48 GLIS2 KLF7 KLF13 LOC100132229 RNA5SP258 ENSG00000253342 GC08M026683 RPLP1P9
GH08F025508 0.6 ENCODE 16.2 -627.8 -627790 0.6 PKNOX1 ZNF384 FEZF1 BCL11B ZIC2 CTBP1 HNF4G TCF7L2 ZNF645 ZEB2 LOC105379332 ENSG00000253342 RNA5SP258 LOC101929315 KCTD9 CDCA2 GC08P025504 GC08P025588
GH08F026575 0.9 FANTOM5 ENCODE 16.2 +441.0 441027 5.2 PKNOX1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 KLF13 SP3 RNA5SP258 LOC100132229 LOC105379332 ENSG00000253342 PNMA2 DPYSL2 SDAD1P1 PSME2P5 GC08M026683
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNA5SP258 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP258 Gene

Chromosome:
8
Start:
26,136,880 bp from pter
End:
26,136,998 bp from pter
Size:
119 bases
Orientation:
Plus strand

Genomic View for RNA5SP258 Gene

Genes around RNA5SP258 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP258 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP258 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP258 Gene

Proteins for RNA5SP258 Gene

Post-translational modifications for RNA5SP258 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP258 Gene

Domains & Families for RNA5SP258 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP258 Gene

Function for RNA5SP258 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP258 Gene

Localization for RNA5SP258 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP258 Gene

Pathways & Interactions for RNA5SP258 Gene

SuperPathways for RNA5SP258 Gene

No Data Available

Interacting Proteins for RNA5SP258 Gene

Gene Ontology (GO) - Biological Process for RNA5SP258 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP258 Gene

Transcripts for RNA5SP258 Gene

mRNA/cDNA for RNA5SP258 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP258 Gene

No ASD Table

Relevant External Links for RNA5SP258 Gene

GeneLoc Exon Structure for
RNA5SP258
ECgene alternative splicing isoforms for
RNA5SP258

Expression for RNA5SP258 Gene

mRNA expression in normal human tissues for RNA5SP258 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP258 Gene:

RNA5SP258
genes like me logo Genes that share expression patterns with RNA5SP258: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNA5SP258 Gene

Orthologs for RNA5SP258 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP258 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 35
  • 72 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 71 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 35
  • 66 (a)
OneToOne
Species where no ortholog for RNA5SP258 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP258 Gene

ENSEMBL:
Gene Tree for RNA5SP258 (if available)
TreeFam:
Gene Tree for RNA5SP258 (if available)

Paralogs for RNA5SP258 Gene

No data available for Paralogs for RNA5SP258 Gene

Variants for RNA5SP258 Gene

Relevant External Links for RNA5SP258 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP258

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP258 Gene

Disorders for RNA5SP258 Gene

No disorders were found for RNA5SP258 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP258 Gene

Publications for RNA5SP258 Gene

No publications were found for RNA5SP258 Gene.

Products for RNA5SP258 Gene

Sources for RNA5SP258 Gene

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