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Aliases for RNA5SP257 Gene

Subcategory (RNA class) for RNA5SP257 Gene

rRNA

Aliases for RNA5SP257 Gene

  • RNA, 5S Ribosomal Pseudogene 257 2 3 5
  • RNA, 5S Ribosomal 257 2 3
  • RN5S257 3

External Ids for RNA5SP257 Gene

ORGUL Members for RNA5SP257 Gene

Previous HGNC Symbols for RNA5SP257 Gene

  • RN5S257

Previous GeneCards Identifiers for RNA5SP257 Gene

  • GC08P020148
  • GC08U901707

Summaries for RNA5SP257 Gene

GeneCards Summary for RNA5SP257 Gene

RNA5SP257 (RNA, 5S Ribosomal Pseudogene 257) is a Pseudogene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for RNA5SP257 Gene - the ORGUL cluster for this gene includes several descriptions:

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

  • 5S ribosomal RNA: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

View fRNAdb secondary structures for RNA5SP257

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNA5SP257 Gene

Genomics for RNA5SP257 Gene

Regulatory Elements for RNA5SP257 Gene

Enhancers for RNA5SP257 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around RNA5SP257 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP257 Gene

Chromosome:
8
Start:
20,290,174 bp from pter
End:
20,290,289 bp from pter
Size:
116 bases
Orientation:
Plus strand

Genomic View for RNA5SP257 Gene

Genes around RNA5SP257 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP257 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP257 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP257 Gene

ORGUL Member Location for RNA5SP257 Gene

ORGUL Member Location for RNA5SP257 gene

Proteins for RNA5SP257 Gene

Post-translational modifications for RNA5SP257 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP257 Gene

Domains & Families for RNA5SP257 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP257 Gene

Function for RNA5SP257 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP257 Gene

Localization for RNA5SP257 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP257 Gene

Pathways & Interactions for RNA5SP257 Gene

SuperPathways for RNA5SP257 Gene

No Data Available

Interacting Proteins for RNA5SP257 Gene

Gene Ontology (GO) - Biological Process for RNA5SP257 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP257 Gene

Drugs & Compounds for RNA5SP257 Gene

No Compound Related Data Available

Transcripts for RNA5SP257 Gene

fRNAdb Secondary structures for RNA5SP257 Gene

  • RF00001;5S_rRNA;ABBA01021548.1/13630-13515

mRNA/cDNA for RNA5SP257 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP257 Gene

No ASD Table

Relevant External Links for RNA5SP257 Gene

GeneLoc Exon Structure for
RNA5SP257
ECgene alternative splicing isoforms for
RNA5SP257

Expression for RNA5SP257 Gene

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RNA5SP257 Gene

Orthologs for RNA5SP257 Gene

Evolution for RNA5SP257 Gene

ENSEMBL:
Gene Tree for RNA5SP257 (if available)
TreeFam:
Gene Tree for RNA5SP257 (if available)

No data available for Orthologs for RNA5SP257 Gene

Paralogs for RNA5SP257 Gene

No data available for Paralogs for RNA5SP257 Gene

Variants for RNA5SP257 Gene

Relevant External Links for RNA5SP257 Gene

HapMap Linkage Disequilibrium report
RNA5SP257

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP257 Gene

Disorders for RNA5SP257 Gene

No disorders were found for RNA5SP257 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP257 Gene

Publications for RNA5SP257 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M. … Barciszewski J. (Nucleic Acids Res. 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov M.M. … Noller H.F. (Science 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles M.A. … Klug A. (J. Mol. Biol. 2000) 1

Products for RNA5SP257 Gene

Sources for RNA5SP257 Gene

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